Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peniophora_20sp._20CONT_20[genbank_20GCA_5F001632445.1_202016-04-28] 1,092 sequences; 46,030,792 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq379 100 2e-16 seq220 100 2e-16 seq339 89.7 4e-13 seq13 89.7 4e-13 >seq379 Length=45813 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 || || ||||||||||| ||||||||||| |||| | | || ||| ||||||| ||||| Sbjct 38543 TGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCAGAAAGAGTG-CGCCCGTCCTCAAGCTG 38601 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | |||||||| ||| ||| | | ||||||||| || || Sbjct 38602 CTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTT 38661 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||||| | || || || | ||||| ||||| || ||||| || ||||| Sbjct 38662 CGCCTTGACGTTGTCAATCGTGTCCGAGGACTCAACCTCGAGCGTGATGGTCTTGCCGGT 38721 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | || ||||| || |||||||| Sbjct 38722 CAAGGTCTTCACGAAGATCTGCAT 38745 >seq220 Length=67240 Score = 100 bits (110), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || ||||||||||||| || || ||||||| |||||| Sbjct 23359 TGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAGCGTACGGCCGTCCTCGAGCTGC 23418 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || | |||||||| || || | || ||||||||| || || Sbjct 23419 TTGCCCGCGAAGATAAGGCGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTG 23478 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| ||| | ||||| ||||| || ||||| || ||||| Sbjct 23479 GCCTTGACATTGTCGATGGTGTCGCTGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTA 23538 Query 48704 AGAGTTTTCACAAAAATCTGCATCGTGT 48731 || || ||||| || |||||||| |||| Sbjct 23539 AGGGTCTTCACGAAGATCTGCATGGTGT 23566 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||||||||||| || ||||||||||| | | ||| | ||||| |||||| Sbjct 22505 TGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAGAGCGTGCGCCCATCCTCGAGCTGC 22564 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || || |||||||| ||| ||| | | ||||||||| || ||| Sbjct 22565 TTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTC 22624 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | || || || |||| |||||| ||||| || ||||| || |||| Sbjct 22625 GCCTTCACGTTGTCG--ATCGTGTCGGACGACTCCACCTCGAGCGTGATGGTCTTGCCGG 22682 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | | || || || || |||||||| Sbjct 22683 TCAACGTCTTGACGAAGATCTGCAT 22707 >seq339 Length=34629 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| ||| |||||| || |||||||| || || | || || ||||||| ||||| Sbjct 18846 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTC-GCTCAGGGTGCGGCCGTCCTCAAGCTG 18788 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | |||||||| || ||| | || ||||||||| || || Sbjct 18787 CTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTT 18728 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | || || || | ||||| ||||| || |||||||| || || Sbjct 18727 GGCCTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTTTTGCCCGT 18668 Query 48703 GAGAGTTTTCACAAAAATCTGCATCGTG 48730 || || || || ||||||||||||||| Sbjct 18667 AAGGGTCTTGACGAAAATCTGCATCGTG 18640 >seq13 Length=301256 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| ||||||||||| || | | || ||||||| |||||| Sbjct 245095 TGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGACCGTCCTCAAGCTGC 245154 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || || |||||||| ||| ||| | || ||||| ||| || ||| Sbjct 245155 TTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGCGGGATACCCTCCTTATCCTGGATCTTC 245214 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||| | | || |||||||| | |||||| ||||| || ||||| || || | Sbjct 245215 GCCTTGACGTTGTCG--ATGGTATCAGAAGACTCGACCTCGAGCGTGATGGTCTTGCCAG 245272 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | | || || || || |||||||| Sbjct 245273 TCAACGTCTTGACGAAGATCTGCAT 245297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421245593673092