Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peniophora_20sp._20CONT_20[genbank_20GCA_5F001632445.1_202016-04-28] 1,092 sequences; 46,030,792 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq379 105 5e-18 seq220 91.5 1e-13 seq13 91.5 1e-13 >seq379 Length=45813 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || ||||||||||| || ||||| ||||| ||||| ||| | || |||| || | |||| Sbjct 38543 TGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGCCCGTCCTCAAGCTGC 38602 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || ||||| ||||| || |||| || | |||||||||||| ||||| Sbjct 38603 TTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTC 38662 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | | || || | ||| ||||| | ||| || || || || ||| Sbjct 38663 GCCTTGACGTTGTCAATCGTGTCCGAGGACTCAACCTCGAGCGTGATGGTCTTGCCGGTC 38722 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 || || || || || |||||||| Sbjct 38723 AAGGTCTTCACGAAGATCTGCAT 38745 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| ||||| ||| || || |||||||| || || || | || | || || | ||| Sbjct 38823 ATGCAGCGTAGACTCCTTCTGGATATTGTAGTCCGAGAGCGTGCGGCCATCCTCAAGCTG 38882 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| ||||| || ||||| ||||| || || | || | |||||||||||| ||||| Sbjct 38883 CTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTT 38942 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || || | | | || || | ||| ||||||| ||| ||||| || || || Sbjct 38943 CGCCTTCACGTTGTCGATGGTGTCCGAGGACTCGACCTCCAACGTGATCGTCTTGCCGGT 39002 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | || |||||||| |||||||| Sbjct 39003 GAGCGTCTTTACAAAGATCTGCAT 39026 >seq220 Length=67240 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || |||||||| || || || |||||||| || || | || | || || | |||| Sbjct 22505 TGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAGAGCGTGCGCCCATCCTCGAGCTGC 22564 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || |||| ||||| || |||| || | |||||||||||| ||||| Sbjct 22565 TTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTC 22624 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | | || |||| ||||||||| | ||| || || || || ||| Sbjct 22625 GCCTTCACGTTGTCGATCGTGTCGGACGACTCCACCTCGAGCGTGATGGTCTTGCCGGTC 22684 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 || || || || || |||||||| Sbjct 22685 AACGTCTTGACGAAGATCTGCAT 22707 >seq13 Length=301256 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 48558 ACCAA-ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||||| |||||| || ||| || || || |||||||| || || | || |||| || Sbjct 245371 ACCAAGATGTAGGGTAGACTCCTTCTGGATGTTGTAATCGGAAAGGGTACGGCCGTCCTC 245430 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 | |||||| || || || || || ||||| || |||| ||||| |||||||||||| Sbjct 245431 GAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 245490 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||||| || ||| | | || || |||| ||| ||||| | ||| || || || Sbjct 245491 GATCTTCGCCTTCACATTGTCGATAGTGTCAGACGACTCGACCTCGAGCGTGATGGTCTT 245550 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || || || |||||||| Sbjct 245551 GCCGGTGAGCGTCTTCACGAATATCTGCAT 245580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380932530196716