Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peniophora_20sp._20CONT_20[genbank_20GCA_5F001632445.1_202016-04-28] 1,092 sequences; 46,030,792 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq13 114 1e-20 seq220 105 6e-18 seq209 89.7 5e-13 seq379 87.8 2e-12 >seq13 Length=301256 Score = 114 bits (126), Expect = 1e-20 Identities = 156/213 (73%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| || || || || || || || || ||||| || || || || Sbjct 245861 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCCTCC 245802 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || |||||||| || Sbjct 245801 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAG 245742 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || || | |||||||| ||||| ||||| |||||| ||| || | |||| || || | Sbjct 245741 CAGCGCCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGTCG-GACGC-TGTCCGACTACA 245684 Query 24882 ACATTCAAAAGGAATCGACACTACA-CTTGGTG 24913 |||| || ||||| || || || || ||||||| Sbjct 245683 ACATCCAGAAGGAGTCTACCCTTCACCTTGGTG 245651 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || || || || || |||||||| || || | | Sbjct 245297 ATGCAGATCTTCGTCAAGACGTTGACTGGCAAGACCATCACGCTCGAGGTCGAGTCTTCT 245238 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| || || || || || || || || || Sbjct 245237 GATACCATCGACAACGTCAAGGCGAAGATCCAGGATAAGGAGGGTATCCCGCCGGACCAG 245178 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| ||||| || ||||| ||||| | | | | || || || ||| Sbjct 245177 CAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACCCTCTCCGACTACAAC 245118 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| ||||| || ||| | || | || ||||||| ||| Sbjct 245117 ATTCAGAAGGAGTCGACGCTTCACCTCGTCCTCCGTCTGCGCGGCGGC 245070 >seq220 Length=67240 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | ||||| || || || |||||||| || || | || Sbjct 22707 ATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACGCTCGAGGTGGAGTCGTCC 22648 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 22647 GACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 22588 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| ||||| || ||||| |||||| | | | | || ||||| ||| Sbjct 22587 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGCACGCTCTCGGATTACAAC 22528 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || ||| | ||| | || |||| || ||| Sbjct 22527 ATCCAGAAGGAGAGCACCCTGCACCTCGTGCTTCGTCTGCGTGGTGGC 22480 Score = 104 bits (114), Expect = 2e-17 Identities = 157/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || ||||| || || || || ||||| || || || Sbjct 23564 ACCATGCAGATCTTCGTGAAGACCCTTACCGGCAAGACCATCACCCTCGAGGTTGAGTCC 23505 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||||| | || | || || |||||||| ||||| || || || |||||||| Sbjct 23504 AGCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCCGAC 23445 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || | ||||| || || || ||||| ||||| | | |||| ||||| Sbjct 23444 CAGCAGCGCCTTATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGTACGCTGTCTGATTAC 23385 Query 24881 AACATTCAAAAGGAATCGACACTACA-CTTGGT--GTTGCG 24918 ||||| || ||||| || || || || |||||| |||||| Sbjct 23384 AACATCCAGAAGGAGTCCACCCTTCACCTTGGTACGTTGCG 23344 >seq209 Length=70723 Score = 89.7 bits (98), Expect = 5e-13 Identities = 121/167 (72%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 139746 GTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGG--TAGTTTCGTGCCGGCT 139803 ||| |||| ||||| || || ||||| ||||| | || || ||| | || ||||| Sbjct 55750 GTCATCCTTCATCGCAACAAGGAAGCAAGACGACATCTGAGGCTTAGGT--GTACCGGCG 55807 Query 139804 GCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCG 139863 || ||||| || || || ||||||||||| | | |||||||| | |||||| ||| Sbjct 55808 GCGAACAGCGTCGGGCTAGCGTGCGTGAAGTACCGCTGAGACATCAAGTTGTACGTCTCG 55867 Query 139864 ATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCAT 139910 ||||||| | | ||||| | || || || ||||| | ||| ||||| Sbjct 55868 ATGGCGCGCTCGATATCGGTACCATGAATGCCGACGGCGACACGCAT 55914 >seq379 Length=45813 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || |||||||| || || || | Sbjct 38745 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACGCTCGAGGTTGAGTCCTCG 38686 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 38685 GACACGATTGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 38626 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| ||||| || ||||| ||||| | | | | || || || ||| Sbjct 38625 CAGCGCCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGGCGCACTCTTTCTGACTACAAC 38566 Query 24884 ATTCAAAAGGA 24894 ||||| ||||| Sbjct 38565 ATTCAGAAGGA 38555 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| ||||| || || || ||| | || || || || | Sbjct 39026 ATGCAGATCTTTGTAAAGACGCTCACCGGCAAGACGATCACGTTGGAGGTCGAGTCCTCG 38967 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 38966 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 38907 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || || ||||||| ||||| || ||||| |||||| Sbjct 38906 CAGCGCCTGATCTTCGCCGGCAAGCAGCTTGAGGAT 38871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449891458897760