Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peniophora_20sp._20CONT_20[genbank_20GCA_5F001632445.1_202016-04-28] 1,092 sequences; 46,030,792 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq379 127 6e-24 seq13 118 3e-21 seq339 93.3 1e-13 seq247 87.8 5e-12 >seq379 Length=45813 Score = 127 bits (140), Expect = 6e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || |||||||| || || || ||||| || || | || || ||||| || | Sbjct 39379 CAAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGGCCATCCTCGA 39438 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||| ||||| || || ||||| || ||||| || || || || ||||| | Sbjct 39439 GCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGA 39498 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || ||||| || |||| || || | || || ||||| || | ||||| | Sbjct 39499 TCTTGGCCTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGC 39558 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| || || || || ||||||||||| Sbjct 39559 CGGTGAGGGTCTTGACGAAAATCTGCAT 39586 >seq13 Length=301256 Score = 118 bits (130), Expect = 3e-21 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| ||||| |||||||| || || || || || || || | || || ||||| |||| Sbjct 245654 CAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGACCATCCTCAA 245713 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||||||||| || || ||||| || |||||||| || || || ||||| | Sbjct 245714 GCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGA 245773 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || || || || || | || || | || || || || || | ||||| | Sbjct 245774 TCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTGC 245833 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || || |||||||| Sbjct 245834 CAGTGAGAGTCTTAACGAAGATCTGCAT 245861 >seq339 Length=34629 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 140532 AGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGT 140591 || ||||| || ||||| || || || || || || | || || || || ||||| Sbjct 18849 AGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCAAGC 18790 Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || ||||| ||||| || || ||||| || || || || || || || ||||| || Sbjct 18789 TGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATC 18730 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || || || ||||| || |||| || || | || || || || || | || || || Sbjct 18729 TTGGCCTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTTTTGCCC 18670 Query 140712 GTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || ||||||||||| Sbjct 18669 GTAAGGGTCTTGACGAAAATCTGCAT 18644 >seq247 Length=55536 Score = 87.8 bits (96), Expect = 5e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 223703 GCAAATTCTGTATGTAATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCA 223762 || || || ||||| || ||||||| | ||||| | ||| || ||||| || | ||| Sbjct 43907 GCGAAATCCGTATGCAAGCCCTCATCGCGGGATATGAGTTCGTTCGAAAAGGTCAGTCCG 43848 Query 223763 GGCATTAAACCTCTCTTTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATA 223822 || | | |||||| || || | ||| ||||| | | || || || || || || ||| Sbjct 43847 GGAAGGAGACCTCTTTTCTTGAGCCAGAATATCGAGGCGAATGCGCCCGAGAAGAAGATA 43788 Query 223823 CCTTCTACACAAGCAAACGCTACTAATCGTGTTGCAAAATTTGAATCTTTGTCTCCTATC 223882 || || |||||||| ||||| || | ||| | ||||| || || | ||| | ||| Sbjct 43787 CCCTCCACACAAGCGAACGCAACAAGTCGAATGGCAAAGCAAGAGTCGTCATCTGCAATC 43728 Query 223883 CATTTTAATGCCCAATCTGCTTT 223905 || || ||||||||||| || Sbjct 43727 CAACGTAGGGCCCAATCTGCCTT 43705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515233199696876