Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaeotremella_20fagi_20[genbank_20GCA_5F001599715.1_202016-03-01] 30 sequences; 22,649,946 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq13 140 8e-28 seq1 123 6e-23 seq2 91.5 3e-13 >seq13 Length=1031976 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || | |||||| || | ||||| || ||||||||| || || ||||| | | Sbjct 993418 CCACCACGTAATCTAAGAACCAAATGAAGGGTTGATTCTTTTTGAATGTTGTAGTCTGAG 993359 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| ||||||||||| || ||||| |||| | |||||| |||| Sbjct 993358 AGTGTACGACCGTCCTCTAATTGTTTACCGGCGAAAATCAATCTTTGTTGATCTGGTGGG 993299 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || ||||| || ||||| || | ||| ||||| || || | ||| ||||| ||| Sbjct 993298 ATACCCTCTTTGTCTTGGATCTTGGATTTAACGTTGTCGATGGTGTCGGATGATTCAACT 993239 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| || || || || ||||| |||||||| || ||||| Sbjct 993238 TCCAAAGTGATGGTTTTACCAGTAAGAGTTTTGACGAAGATTTGCAT 993192 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || | ||| || || | || | ||| ||||||||| || || || |||| | Sbjct 993190 CCACCACGTAATCTGAGAACCAAGTGGAGGGTGGATTCTTTTTGAATGTTGTAATCGGAG 993131 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || ||||||||||| || ||||| |||| ||||||||| ||| Sbjct 993130 AGTGTACGACCATCCTCTAATTGTTTACCAGCGAAAATCAAACGCTGTTGGTCTGGTGGA 993071 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || || ||||| || | ||| ||||| || || | || ||||| ||| Sbjct 993070 ATTCCTTCCTTGTCTTGGATCTTGGATTTAACGTTATCAATGGTGTCTGAAGATTCGACT 993011 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || || ||||| || || || || ||||| Sbjct 993010 TCAAGGGTGATAGTTTTACCAGTAAGAGTTTTAACAAAGATTTGCAT 992964 Score = 105 bits (116), Expect = 2e-17 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 |||||||| || || | | || | ||||| || || ||||||||||| || || Sbjct 993932 TGTCCACCACGTAGACGTAAAACCAAATGAAGTGTAGACTCCTTTTGGATATTGTAATCA 993873 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | | || | || ||||| || ||||| || || ||||| || | ||||| ||| Sbjct 993872 GACAAGGTTCTACCATCTTCCAACTGTTTACCGGCAAAGATGAGTCTTTGTTGG---TCT 993816 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || ||||||||||| |||||||| | ||| ||||| || |||| ||| ||| Sbjct 993815 GGGGGGATACCTTCTTTATCTTGGATTTTGGATTTAACGTTATCGATAGTATCAGAGGAT 993756 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || |||||||| ||||| || || ||||| ||| Sbjct 993755 TCGACTTCGAGGGTGATGGTTTTACCGGTAAGA 993723 >seq1 Length=2409791 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || | |||||| || | ||||| || ||| |||||||| || || || | Sbjct 586104 CCACCACGTAATCTAAGAACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAATCTGAA 586163 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | |||||||| |||||||| || |||||||||| ||| ||||| |||| Sbjct 586164 AGAGTTCTACCGTCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGGTCTGGTGGG 586223 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||||||||| |||||||| | ||| ||||| || || | ||| || || || Sbjct 586224 ATACCTTCTTTATCTTGGATTTTGGATTTAACGTTATCGATGGTGTCGGATGACTCAACC 586283 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAG 288452 ||||| ||||| || || || || || Sbjct 586284 TCGAGGGTGATGGTTTTACCCGTAAG 586309 >seq2 Length=2299803 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 288298 TAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGA 288357 ||||| | || || | ||| ||||| |||||||| || ||||| || | || ||||| Sbjct 838529 TAGTCAGAAAGTGTTCTTCCATCTTCCAATTGTTTACCAGCGAAAATTAATCGTTGTTGG 838588 Query 288358 GAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTC 288417 |||||||||||||||||| ||||| || | ||| ||||| || || | ||| Sbjct 838589 TCTGGTGGGATTCCTTCTTTATCTTGGATCTTGGATTTGACGTTGTCGATGGTGTCGGAT 838648 Query 288418 GATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 ||||| || ||||| || || ||||| || || || Sbjct 838649 GATTCGACCTCGAGAGTAATGGTCTTTCCCGTGAG 838683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653946570340