Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaeotremella_20skinneri_20[genbank_20GCA_5F001599695.1_202016-03- 01] 58 sequences; 20,788,256 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq15 120 4e-22 seq5 120 4e-22 >seq15 Length=579413 Score = 120 bits (132), Expect = 4e-22 Identities = 154/210 (73%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||||||||| ||| ||| ||||||||||||| || | |||||||| || || | Sbjct 218572 ACATGCGAAGTCGGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTCAA 218513 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253 ||||||||| || |||||||| || ||||| || ||||| || || || || || ||||| Sbjct 218512 TCCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAAGCGAAGGAACCGGAGAAGAA 218453 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA--ACCGGCGCT-GTCATG 24310 || || || || || |||||||| || |||| ||| || | | |||| ||| Sbjct 218452 GATACCCTCAACGGCGGCAAAGGCGATTAGTCGTTCGGCAAAGGTCGATCGCTCATCAGA 218393 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTT 24340 |||||||| ||||||| | ||| ||||| Sbjct 218392 GATCCACTTGAGAGCCCAGTTGGCTTTCTT 218363 >seq5 Length=1078720 Score = 120 bits (132), Expect = 4e-22 Identities = 467/733 (64%), Gaps = 46/733 (6%) Strand=Plus/Minus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 || || || || |||||||||||| | ||| || ||||| | || || ||||| Sbjct 587684 CCTGGGCACTCGGCCGGACACATCAGAGTCCAGTCGCCGTCGGATTCGACACGCTTCATG 587625 Query 54041 AAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 54099 |||||||| ||||||||||| || || || || ||||| | || |||||| ||||| Sbjct 587624 AAGAGATCGGGAATCCAAAGGGCGTAGAACAAG-TCTCTTGCTCGGACTTCCTCTTTTCC 587566 Query 54100 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 54159 ||||| | || ||||| | | | ||| | |||||| || || | ||| || Sbjct 587565 GTGGTTCTTACGCAAGTCCAGGAAGTCGAAGACATCGGCATGCCAAGGCTCAAGGTAGAT 587506 Query 54160 GGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 54219 || | | || || || ||||| || || || || | ||| | ||| ||| | | | Sbjct 587505 GGCAAAGGCACCGGGGCGCTTGTTACCACCTTGGTCGACGTAACGAGCTGTGGCGTCAAA 587446 Query 54220 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 54279 ||| || ||| || | ||||| || || || ||||| |||| || || || Sbjct 587445 GGCTCGCAGCATGGGGACGATACCGTTAGAGTAGCCGTTGGTGCCGGCAATGTATGAACC 587386 Query 54280 ACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGC 54339 ||||||| || || || ||||| || || || || | || ||||| || Sbjct 587385 CTTGGCACGGATGTTGTGGATGTGGAGACCAATACCACCGGCGGTCTTGGAGATCTGAGC 587326 Query 54340 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 54399 || || | || || ||||||||||| ||| |||||| |||| | || || Sbjct 587325 ACAGGTCTTGAGAGTGTCGTAGATGCCCTCAATAGAGTCATCCCGCATGGCGACGAGGAA 587266 Query 54400 ACAGCTAGACATTTG---GTGACGACTA-----GTTCCC--GC--ATTA---------AA 54438 ||| |||||| || |||| || || ||| || |||| || Sbjct 587265 ACATGAAGACATCTGAGCGTGAGGAGTACCAGCGTTGAAAAGCTAATTATCAGCTTGGAA 587206 Query 54439 TAAGG---------------TAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 || | | || |||||||| || || | ||||| | || || Sbjct 587205 TACTGGTTTTTCACTCACAGTTGGGGAAGCGTGAGTGAAGTAACGCTCAGACATGAGGTT 587146 Query 54484 GTACGTCTCGATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCA 54539 ||| ||||| || || ||| || | || | |||| || || |||||||||| Sbjct 587145 GTAGGTCTCAATGACTTTGTCAATGTTGGCGCCGTGGATG----CCGACAGCGACACGCA 587090 Query 54540 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTT 54599 | | |||||||||||||| ||| ||||||||| ||| || |||| ||| ||| | Sbjct 587089 TGATCATGTGCTGAGGTCGTTCGACGATCTTGCCGTTGATGCGGAGCAGGTACGATCGCT 587030 Query 54600 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGT 54659 | | ||| || ||||| || |||||||| | ||||| || ||||| || || |||||| Sbjct 587029 CAAGAGTCTTGAAACCGAAGTAGTTGTAAGCGAAGTCACGGTCGTAGATGATGGCTGAGT 586970 Query 54660 TGAGTTTATCCTT 54672 ||| |||||| Sbjct 586969 CGAGAGCATCCTT 586957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721169551840