Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaeotremella_20skinneri_20[genbank_20GCA_5F001599695.1_202016-03- 01] 58 sequences; 20,788,256 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq15 134 1e-26 seq1 127 2e-24 seq12 89.7 5e-13 >seq15 Length=579413 Score = 134 bits (148), Expect = 1e-26 Identities = 180/248 (73%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 116954 GCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCC 117013 |||||||| || || || ||| | |||| ||| | ||||| || |||||| | Sbjct 218336 GCCATCGACACCATCCCCTGCATTGCCAAGAAAGCCAACTGGGCTCTCAAGTGGATCTCT 218395 Query 117014 GGCAGAGAGGCCG-CCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTT 117072 | ||| | || |||| | ||| || || | ||||| || ||||| ||||| |||| Sbjct 218396 GAT-GAGCGATCGACCTTTGCCGAACGACTAATCGCCTTTGCCGCCGTTGAGGGTATCTT 218454 Query 117073 CTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCT 117132 ||| || || ||||| |||| || ||||| ||||| || || ||||||||||| | Sbjct 218455 CTTCTCCGGTTCCTTCGCTTCCATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGATT 218514 Query 117133 GACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTT 117192 ||| ||| |||||||||||||||| | |||||||||||||| |||||| || ||| | Sbjct 218515 GACCTTCTCCAACGAGCTCATCTCCCGAGACGAGGGTCTGCACACCGACTTCGCATGTCT 218574 Query 117193 GCTGTTCA 117200 || |||| Sbjct 218575 CCTATTCA 218582 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || |||||||| | || || || | | Sbjct 38322 ATGCAGATCTTCGTCAAGACTCTTACCGGAAAGACCATCACTCTTGAGGTTGAGTCTTCT 38263 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | || || |||| ||||||||||| |||||| | ||||| Sbjct 38262 GACACCATCGACAATGTGAAATCGAAGATTCAGGACAAAGAGGGTATCCCCCCAGACCAA 38203 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| || || |||||||| |||| || |||||| |||||||| Sbjct 38202 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGACGGCCGAACCCTCTCGGACTACAAT 38143 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||| ||| | ||||| || Sbjct 38142 ATCCAGAAAGAGTCGACGCTTCA 38120 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 ||||| | ||||| ||||| |||||| | |||||||| || || |||| ||| ||||| Sbjct 38010 AAAATCCAGGACAAGGAGGGTATCCCCCCAGACCAGCAGCGTCTGATCTTCGCCGGCAAG 37951 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||| |||| || | |||||| | |||||||| |||||||||||| | || || ||| Sbjct 37950 CAGTTGGAGGATGGGCGCACTTTGTCGGACTACAATATCCAGAAGGAGTCTACACTTCAT 37891 Query 40894 CTAGTGTTGCG 40904 || || |||| Sbjct 37890 CTTGTCCTGCG 37880 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 116779 CGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGA 116838 ||||||||||||||||||||| ||||||||||||||| | ||||| |||| || || Sbjct 218103 CGACGGCATCGTCAACGAGAACCTGGTCGAGCGTTTCTCATCCGAGGTTCAGGCTGCTGA 218162 Query 116839 GGCGCGGTGCTTCTACGGCTTTCAGATC 116866 ||| ||| ||||||||||| || ||| Sbjct 218163 GGCCAAGTGTTTCTACGGCTTCCAAATC 218190 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/155 (73%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || || || ||||||||| |||| || ||| | | |||| | | | |||| ||||| Sbjct 38857 ACCGGAAAGACCATCACCCTCGAAGTTGAATCTTCGGACACCATTGACAACG-TCAAGTC 38799 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||||||||| || ||| | || |||||||||||||||| ||| || || Sbjct 38798 CAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAGCAACGACTCATCTTCGCCGGAAA 38739 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 || || || |||| ||||| || ||||||| Sbjct 38738 GCAACTTGAGGACGGCCGCACTCTGTCTGACTACA 38704 >seq1 Length=3245857 Score = 127 bits (140), Expect = 2e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGT-GCAAACGCTCAA 40769 || |||||||||||||||||| |||| || || | | |||| | | | |||| |||| Sbjct 3091377 CTTACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCGGACACCATCGACAACG-TCAA 3091435 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | || || | ||||| ||||| |||||| | ||||| || || ||||||| || || Sbjct 3091436 GTCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAACAGCGTCTCATCTTTGCTGG 3091495 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 |||||||| || || | || || ||| |||||||||||||||||||||| | || || Sbjct 3091496 TAAACAGCTCGAGGATGGACGTACTCTCTCCGACTACAACATCCAGAAGGAGTCTACCCT 3091555 Query 40890 GCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || |||||| | ||| | || || Sbjct 3091556 CCACCTGGTGTTGAGGTTGCGTGGTGG 3091582 >seq12 Length=702644 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAG 40770 ||||||||||| ||||||||| |||| ||||| | | |||| | | | |||| Sbjct 574933 CTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACGATCGACAATGTCAAA 574992 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 ||||| | ||||||||||| |||||| | |||||||| ||| | || | ||| || Sbjct 574993 TCCAAAATCCAGGACAAAGAGGGTATCCCCCCAGACCAGCAGCGATTGATTTTCGCCGGG 575052 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||||||| || |||| | || |||| ||||||| Sbjct 575053 AAACAGCTCGAGGACGGCAGGACTCTCAGTGACTACA 575089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218826466080