Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaeotremella_20skinneri_20[genbank_20GCA_5F001599695.1_202016-03- 01] 58 sequences; 20,788,256 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq15 93.3 5e-14 seq1 89.7 6e-13 >seq15 Length=579413 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| || | ||| | ||| |||||| || |||||||| || | || ||| ||| | Sbjct 37879 ACGCAGGACAAGATGAAGTGTAGACTCCTTCTGGATATTGTAGTCCGACAAAGTGCGCCC 37938 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | |||||| || ||||| || || ||||||||||| | || | | |||||| Sbjct 37939 ATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATACCCTCCTT 37998 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| |||||| ||| | | | | || || || ||||| || | || || Sbjct 37999 GTCCTGGATTTTGGATTTCACATTGTCTATGGTATCCGAAGACTCCACCTCAAGAGTAAT 38058 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || || || ||||| || ||||| ||||| Sbjct 38059 GGTCTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 38094 Score = 91.5 bits (100), Expect = 2e-13 Identities = 132/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 43006 TGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCT 43065 |||| || | ||| || || |||| || |||||||| |||||||| || | ||||| | Sbjct 38421 TGTAGTCGGACAGGGTTCGTCCGTCCTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGTT 38480 Query 43066 GGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCC-ACCGTGTC 43123 |||| | || | || |||||||||| ||| | || | |||| ||| | | | ||||| Sbjct 38481 GGTCTGGAGGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGA-CGTTGTCGATGGTGTC 38538 Query 43124 GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || | |||||||| ||||| || || ||||| || ||||||||||| Sbjct 38539 TGAGGACTCGACCTCCAGAGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAGATTTGCAT 38598 Query 43184 T 43184 | Sbjct 38599 T 38599 >seq1 Length=3245857 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||||| || | || |||||| || || ||||| || | ||||| || | || Sbjct 3091568 CAACACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATC 3091509 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || ||||| |||||||| || ||||| ||||| ||||| | || | | ||||||||| Sbjct 3091508 CTCGAGCTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGGATACCCTCCTTGTC 3091449 Query 43091 CATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGG 43149 | ||| || |||| ||| | | | ||||| || || || |||| ||||||| Sbjct 3091448 CTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGG 3091390 Query 43150 TTTTGCCCGTTAG 43162 |||||||||| || Sbjct 3091389 TTTTGCCCGTAAG 3091377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817185432240