Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaeotremella_20skinneri_20[genbank_20GCA_5F001599695.1_202016-03- 01] 58 sequences; 20,788,256 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq15 114 2e-20 seq4 100 4e-16 seq5 98.7 1e-15 >seq15 Length=579413 Score = 114 bits (126), Expect = 2e-20 Identities = 176/249 (71%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||||||||| ||| |||||||||||| |||| || | |||||||| || || | Sbjct 218572 ACATGCGAAGTCGGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTCAA 218513 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 ||||||||| || |||||||| || ||||| || || || || || || || || ||||| Sbjct 218512 TCCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAAGCGAAGGAACCGGAGAAGAA 218453 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCACT-GTCATG 42240 ||| || || || || |||||||| || |||| || || | | | || ||| Sbjct 218452 GATACCCTCAACGGCGGCAAAGGCGATTAGTCGTTCGGCAAAGGTCGATCGCTCATCAGA 218393 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 |||||||| ||||||| | ||| ||||| | || || || || || ||||| | Sbjct 218392 GATCCACTTGAGAGCCCAGTTGGCTTTCTTGGCAATGCAGGGGATGGTGTCGATGGCTTC 218333 Query 42301 AAAGAGATA 42309 ||||| || Sbjct 218332 GAAGAGGTA 218324 >seq4 Length=1370089 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 42086 CCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 42145 ||||| || | ||| || || ||||| |||||||| | || ||||| | || ||||| Sbjct 447638 CCCTCGTCGCGACTGATCAACTCGTTCGAAAACGTCAAACCAGGCATCAATCCTCGCTTC 447579 Query 42146 TTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAG 42205 || | ||| ||||||| |||||| || || ||||||||||| || || ||||| ||||| Sbjct 447578 TTCAACCAGAATATAGCCGCAAACGACCCCGAAAAGAAGATCCCCTCGACTGCTGCAAAC 447519 Query 42206 GCAATAAG 42213 ||||| || Sbjct 447518 GCAATGAG 447511 >seq5 Length=1078720 Score = 98.7 bits (108), Expect = 1e-15 Identities = 454/719 (63%), Gaps = 46/719 (6%) Strand=Plus/Minus Query 71988 CGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAAT 72047 ||||||||||| | ||| || || || | || || ||||| |||||||| ||||| Sbjct 587670 CGGACACATCAGAGTCCAGTCGCCGTCGGATTCGACACGCTTCATGAAGAGATCGGGAAT 587611 Query 72048 CCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAA 72106 |||||| || || || || ||||| | || ||||| ||||| ||||| | Sbjct 587610 CCAAAGGGCGTAGAACAAG-TCTCTTGCTCGGACTTCCTCTTTTCCGTGGTTCTTACGCA 587552 Query 72107 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCG 72166 || ||||| | | | ||| | |||||| || || | ||| ||||| | | || | Sbjct 587551 AGTCCAGGAAGTCGAAGACATCGGCATGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGG 587492 Query 72167 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 72226 | || ||||| || || || || | ||| | ||| ||| | | | ||| || ||| | Sbjct 587491 GGCGCTTGTTACCACCTTGGTCGACGTAACGAGCTGTGGCGTCAAAGGCTCGCAGCATGG 587432 Query 72227 GAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT 72286 | | ||||| || || || ||||| |||| || || || ||||||| || | Sbjct 587431 GGACGATACCGTTAGAGTAGCCGTTGGTGCCGGCAATGTATGAACCCTTGGCACGGATGT 587372 Query 72287 TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 72346 || || ||||| || || || || | || ||||| || || || | | Sbjct 587371 TGTGGATGTGGAGACCAATACCACCGGCGGTCTTGGAGATCTGAGCACAGGTCTTGAGAG 587312 Query 72347 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 72406 | || ||||||||||| ||| |||||| |||| | || ||||| |||||| | Sbjct 587311 TGTCGTAGATGCCCTCAATAGAGTCATCCCGCATGGCGACGAGGAAACATGAAGACATCT 587252 Query 72407 G---GTGACGACTA-----GTTCCC--GC--ATTA---------AATAAGG--------- 72436 | |||| || || ||| || |||| |||| | Sbjct 587251 GAGCGTGAGGAGTACCAGCGTTGAAAAGCTAATTATCAGCTTGGAATACTGGTTTTTCAC 587192 Query 72437 ------TAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAG 72490 | || |||||||| || || | ||||||| || ||||| |||||||| Sbjct 587191 TCACAGTTGGGGAAGCGTGAGTGAAGTAACGCTCAGACATGAGGTTGTAGGTCTCAATGA 587132 Query 72491 CTGATTCTATATC----CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGA 72546 || || || | || | |||| || || ||||||||||| | ||| |||||| Sbjct 587131 CTTTGTCAATGTTGGCGCCGTGGATG----CCGACAGCGACACGCATGATCATGTGCTGA 587076 Query 72547 GGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAA 72606 |||| ||| ||||||||| || || | || ||| ||| || | ||| || ||| Sbjct 587075 GGTCGTTCGACGATCTTGCCGTTGATGCGGAGCAGGTACGATCGCTCAAGAGTCTTGAAA 587016 Query 72607 CCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665 || || |||||||| | ||||| || ||||| || || | || | ||| |||||| Sbjct 587015 CCGAAGTAGTTGTAAGCGAAGTCACGGTCGTAGATGATGGCTGAGTCGAGAGCATCCTT 586957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138713424080