Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaeotremella_20skinneri_20[genbank_20GCA_5F001599695.1_202016-03- 01] 58 sequences; 20,788,256 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq15 154 3e-32 seq7 100 7e-16 seq1 84.2 5e-11 >seq15 Length=579413 Score = 154 bits (170), Expect = 3e-32 Identities = 173/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | |||| ||| ||||| |||||||| ||||| | | Sbjct 38096 CCACCACGGAGACGGAGGACCAAGTGAAGCGTCGACTCTTTCTGGATATTGTAGTCCGAG 38155 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || || |||||||| | || ||||| |||||||||||||||||||| ||| Sbjct 38156 AGGGTTCGGCCGTCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGTTG---GTCTGGG 38212 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || ||||| ||||| || |||| |||||| || || || | || || || Sbjct 38213 GGGATACCCTCTTTGTCCTGAATCTTCGATTTCACATTGTCGATGGTGTCAGAAGACTCA 38272 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| ||||| |||||||||||||| |||||||| Sbjct 38273 ACCTCAAGAGTGATGGTCTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 38322 Score = 141 bits (156), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || ||||||| || || || |||||||| ||||| | Sbjct 37868 CCACCACGGAGACGCAGGACAAGATGAAGTGTAGACTCCTTCTGGATATTGTAGTCCGAC 37927 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 | ||||| || || || || || || || ||||||||||||||||| || ||| Sbjct 37928 AAAGTGCGCCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTG---GTCTGGG 37984 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || ||||||||||| | |||||| || ||||| | ||| || || Sbjct 37985 GGGATACCCTCCTTGTCCTGGATTTTGGATTTCACATTGTCTATGGTATCCGAAGACTCC 38044 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| ||||| |||||||||||||| |||||||| Sbjct 38045 ACCTCAAGAGTAATGGTCTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 38094 Score = 104 bits (114), Expect = 6e-17 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 |||||||| || || | || || || || | || |||||||||||| || ||||| Sbjct 37580 TGTCCACCACGAAGACGGAGGACAAGGTGTAGAGTAGATTCTTTTTGGATGTTGTAGTCC 37639 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || | ||| || || || || || || || ||||||| | |||||| ||| Sbjct 37640 GAAAGAGTCCTTCCATCCTCCAACTGCTTCCCGGCAAAGATCAACCTCTGTTG---GTCT 37696 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || || || || ||||||||||||| |||||||| || || | ||| |||| Sbjct 37697 GGGGGAATGCCCTCCTTGTCCTGGATTTTCGACTTCACGTTGTCGATGGTATCAGACGAT 37756 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 || || || || ||||| ||||| || || || Sbjct 37757 TCAACCTCCAGTGTGATGGTCTTTCCCGTTAG 37788 >seq7 Length=1014673 Score = 100 bits (110), Expect = 7e-16 Identities = 245/363 (67%), Gaps = 10/363 (3%) Strand=Plus/Plus Query 72417 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 72476 || || ||| | || || ||||| || |||||| |||| || ||||| || | || Sbjct 187374 CAGGCTTCTACCTCTGAATTGTACGGTAAAGTGGTCGAAACCCCGCAGACAGAGACGACC 187433 Query 72477 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA 72536 || || || ||| | || ||||| || ||||| ||||||| | |||||| Sbjct 187434 CCATTCTACCCTAGGTCGCCATACGGCGTGGCAAAACTGTACGCATTCTGGATCGTCGTC 187493 Query 72537 AATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGT 72596 |||||||| || || ||| |||| ||||||| |||| ||||| |||||| Sbjct 187494 AATTACCGGGAATCATATGGAATGTTCACATGCAACGGGATTCTGTTCAACCACGAGTCA 187553 Query 72597 CCCAACAGAGGCC-ATCAGTTCGTGACTCGTAAAAT--CACGAA-GGTGGTCGCGAATAT 72652 || | |||| | | || || || || || || || | ||| ||| | || |||| Sbjct 187554 CCTCGCCGAGGTCGAACATTT-GTAACACGAAAGATTTCTCGAGCGGTAGCCGA-AATAG 187611 Query 72653 TTTCAATGGTG-TCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGG 72711 | || | | || | || ||||| | || ||||| || | ||||||||||||| Sbjct 187612 CTGCAGGGAAACTAGAGACAT---TGTATTTGGGGAATATCCATTCGAAAAGAGATTGGG 187668 Query 72712 GATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATG 72771 | |||| || || || || |||| ||||||| ||||||| |||||||| | ||||| | Sbjct 187669 GCCATGCTAAAGACTATGTGGAAGGAATGTGGCTGATGCTCCAACAAGACAAGCCGGAAG 187728 Query 72772 ACT 72774 ||| Sbjct 187729 ACT 187731 >seq1 Length=3245857 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/173 (71%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| || ||||| || || | ||||| || || ||| Sbjct 3091546 TCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCGAGCTGTTTACCAGCAAAG 3091487 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||||||||| ||| ||||| || || || |||||||| || | || ||| Sbjct 3091486 ATGAGACGCTGTTG---GTCTGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACG 3091430 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 || || || | || || || || ||||| ||||| || || || || || Sbjct 3091429 TTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTTTTGCCCGTAAG 3091377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653523369324