Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaeotremella_20skinneri_20[genbank_20GCA_5F001599695.1_202016-03- 01] 58 sequences; 20,788,256 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq15 152 6e-31 seq5 131 2e-24 seq4 98.7 1e-14 >seq15 Length=579413 Score = 152 bits (168), Expect = 6e-31 Identities = 211/289 (73%), Gaps = 11/289 (4%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || ||| | |||||| |||| | ||||||||||| || ||||| Sbjct 218551 ACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTCAATCCGGGCATGAGACCACGCTT 218492 Query 869239 CTTGAGCCAAAAGATGG---CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 869295 ||| ||||| ||||||| || || ||| | ||||| ||||| ||||| |||||||| Sbjct 218491 CTTCAGCCAGAAGATGGAAGCGAAGGAACCG---GAGAAGAAGATACCCTCAACGGCGGC 218435 Query 869296 AAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGC 869355 |||| |||| || || ||||||||| ||||| | ||| | ||||||||| | || Sbjct 218434 AAAGGCGATTAGTCGTTCGGCAAAG--GTCGA-TCGCTCATCAGAGATCCACTTGAGAGC 218378 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCT 869414 ||||| ||| || || | | || | ||||||||||| ||||||| |||| Sbjct 218377 CCAGTTGGCTTTCTTGGCAATGCAGGGGATGGTGTCGATGGCTTCGAAGAGGTAAGTCC- 218319 Query 869415 TTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 ||| |||||||||| ||||||||||||||||| || |||||||| Sbjct 218318 GGCGGGCGGGGTCCTTGATGTAGGTGTCGATCAGGAGGGAGTAGGTCTC 218270 >seq5 Length=1078720 Score = 131 bits (144), Expect = 2e-24 Identities = 180/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||||||||| || || ||| ||| |||| | || |||||||| |||| ||||| || Sbjct 587474 TGGTCGACGTAACGAGCTGTGGCGTCAAAGGCTCGCAGCATGGGGACGATACCGTTAGAG 587415 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||||||||| || | ||| | || ||| || | ||||| | | || Sbjct 587414 TAGCCGTTGGTGCCGGCAATGTATGAACCCTTGGCACGGATGTTGTGGATGTGGAGACCA 587355 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | ||||||||| | || || ||||| ||||||||||||||||| Sbjct 587354 ATACCACCGGCGGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTGTCGTAGATGCCCTCA 587295 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||||| || |||| | ||||| || || || || | || | ||| | || || Sbjct 587294 ATAGAGTCATCCCGCATGGCGACGAGGAAACATGAAGACATCTGAGCGTGAGGAGTACCA 587235 Query 1630306 GCGTTGAAGAGC 1630317 |||||||| ||| Sbjct 587234 GCGTTGAAAAGC 587223 >seq4 Length=1370089 Score = 98.7 bits (108), Expect = 1e-14 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 18234 CGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCC 18293 |||| ||||| ||| | | ||||| || || || ||||| |||| ||||| | || Sbjct 561609 CGAGTTCGATCAAGTCCACCTGCAGTCTGGGACAGAACACGGCATCACCCTCGGTACCCC 561550 Query 18294 CGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAA 18353 | | || || | || |||| ||||| |||||| |||||| |||| | | Sbjct 561549 CATAGGTCTTATCGTTCACAACAAAGACCAACGGCCCCACGACTACGCCGAGACCGACCT 561490 Query 18354 GGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTC 18413 | || || || || || ||||| | ||||||| | |||||||||||| |||| || || Sbjct 561489 CTTCCCCCGCCCATCCCATGCCGATTTCACCTACCTCGCCAAGTACGGCGTCAAAGCCTC 561430 Query 18414 GTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGC 18470 ||| || || || ||| | ||||| || |||||| || || || ||||| || || Sbjct 561429 GTCAGGAGGTGGTCGGGCCTCTGCACGAGAGACCATCGGTCGAGTTGCCGCTGGAGC 561373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107134440248386