Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaeotremella_20skinneri_20[genbank_20GCA_5F001599695.1_202016-03- 01] 58 sequences; 20,788,256 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq15 141 2e-28 seq1 123 6e-23 seq12 84.2 5e-11 >seq15 Length=579413 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||||||||| ||||| ||||||||||||| ||||| || | | ||| Sbjct 37588 ACGAAGACGGAGGACAAGGTGTAGAGTAGATTCTTTTTGGATGTTGTAGTCCGAAAGAGT 37647 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || | ||||||||| || ||||| | | |||||||| || ||||| || Sbjct 37648 CCTTCCATCCTCCAACTGCTTCCCGGCAAAGATCAACCTCTGTTGGTCTGGGGGAATGCC 37707 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| ||||| || |||||| |||||||| || || | ||| || || | Sbjct 37708 CTCCTTGTCCTGGATTTTCGACTTCACGTTGTCGATGGTATCAGACGATTCAACCTCCAG 37767 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| ||||| ||||| Sbjct 37768 TGTGATGGTCTTTCCCGT 37785 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || || || ||||| |||| |||||| || | | |||| || ||| Sbjct 38111 AGGACCAAGTGAAGCGTCGACTCTTTCTGGATATTGTAGTCCGAGAGGGTTCGGCCGTCT 38170 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || |||||||| || || ||||| || ||||| Sbjct 38171 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGTTGGTCTGGGGGGATACCCTCTTTGTCC 38230 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| ||||||||||| || | || || || | ||||| ||| Sbjct 38231 TGAATCTTCGATTTCACATTGTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTC 38290 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| || | ||| | ||||| Sbjct 38291 TTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 38322 Score = 116 bits (128), Expect = 9e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 225533 CATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTT 225592 || |||| |||| || |||| || || || |||||||| |||||||| || | || | Sbjct 38418 CACTGTAGTCGGACAGGGTTCGTCCGTCCTCAAGCTGCTTTCCAGCGAAAATCAAACGCT 38477 Query 225593 GTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT 225652 ||||||| || ||||| || |||||||| || ||||| ||| || |||||||||| Sbjct 38478 GTTGGTCTGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGT 38537 Query 225653 CTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCA 225712 |||||| || || || | ||||| |||||||| || | || || | ||| | ||||| Sbjct 38538 CTGAGGACTCGACCTCCAGAGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAGATTTGCA 38597 Query 225713 TT 225714 || Sbjct 38598 TT 38599 Score = 104 bits (114), Expect = 6e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 225533 CATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTT 225592 || |||| || | || ||| | || || || || ||||| || |||||||| ||||||| Sbjct 38701 CACTGTAGTCAGACAGAGTGCGGCCGTCCTCAAGTTGCTTTCCGGCGAAGATGAGTCGTT 38760 Query 225593 GTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT 225652 | || || || |||||||| || |||||||||||||| ||| || || ||||||| Sbjct 38761 GCTGATCTGGGGGAATACCCTCTTTGTCTTGGATCTTGGACTTGACGTTGTCAATGGTGT 38820 Query 225653 CTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 | || | ||| || || | ||||| ||||| || ||||| Sbjct 38821 CCGAAGATTCAACTTCGAGGGTGATGGTCTTTCCGGTCAA 38860 >seq1 Length=3245857 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558 |||| || |||||||| || || || || |||| ||||| |||| | ||| | ||| Sbjct 3091570 CTCAACACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCA 3091511 Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 || || ||||| || ||||| ||||| || || |||||||| || || ||||| |||||| Sbjct 3091510 TCCTCGAGCTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGGATACCCTCCTTG 3091451 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 || |||||||| ||| || ||||||||||| || | || || || | ||||| Sbjct 3091450 TCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATG 3091391 Query 225679 GTCTTGCCCGT 225689 || |||||||| Sbjct 3091390 GTTTTGCCCGT 3091380 >seq12 Length=702644 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 225549 AGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 ||| || || || || ||||| ||||| ||||| || | ||| || ||||| || || || Sbjct 575076 AGTCCTGCCGTCCTCGAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCTGGGGGGAT 575017 Query 225609 ACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTC 225668 ||| || ||||| ||||| || || ||| ||||| ||||| || | || || || Sbjct 575016 ACCCTCTTTGTCCTGGATTTTGGATTTGACATTGTCGATCGTGTCCGAAGACTCGACCTC 574957 Query 225669 TAACGTGATCGTCTTGCCCGT 225689 | ||||| ||||||||||| Sbjct 574956 GAGGGTGATGGTCTTGCCCGT 574936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530313800252