Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaeotremella_20skinneri_20[genbank_20GCA_5F001599695.1_202016-03- 01] 58 sequences; 20,788,256 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 147 5e-30 seq15 141 2e-28 seq12 129 1e-24 >seq1 Length=3245857 Score = 147 bits (162), Expect = 5e-30 Identities = 149/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || || ||||| |||||||||||||| || || ||||||||||| |||||||| Sbjct 3091377 CTTACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCGGACACCATCGACAACGTCAAG 3091436 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| || || ||||| || ||||| || || || ||||| || || Sbjct 3091437 TCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAACAGCGTCTCATCTTTGCTGGT 3091496 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 ||||||||||| |||||| | ||||| |||| || ||| |||| || || || || || Sbjct 3091497 AAACAGCTCGAGGATGGACGTACTCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTC 3091556 Query 178122 CATCTTGTTTTGAG 178135 || || || ||||| Sbjct 3091557 CACCTGGTGTTGAG 3091570 >seq15 Length=579413 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || ||||| || ||||| || ||||| || || ||| Sbjct 38319 CAGATCTTCGTCAAGACTCTTACCGGAAAGACCATCACTCTTGAGGTTGAGTCTTCTGAC 38260 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || ||| ||||||||||||||||| || ||||| || ||||| || Sbjct 38259 ACCATCGACAATGTGAAATCGAAGATTCAGGACAAAGAGGGTATCCCCCCAGACCAACAG 38200 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||||||||| ||||| ||||| || | || || | || || || || Sbjct 38199 CGTCTGATCTTCGCCGGAAAGCAGCTGGAAGACGGCCGAACCCTCTCGGACTACAATATC 38140 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 38139 CAGAAAGAGTCGACGCTTCA-CTTG 38116 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || ||||| || ||||| || ||||| ||| || || |||||||| ||||| || Sbjct 37788 CTAACGGGAAAGACCATCACACTGGAGGTTGAATCGTCTGATACCATCGACAACGTGAAG 37729 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 || || |||||||| || || || || || ||||| || | | ||||| ||||| Sbjct 37728 TCGAAAATCCAGGACAAGGAGGGCATTCCCCCAGACCAACAGAGGTTGATCTTTGCCGGG 37669 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 || ||| | || ||||||||||||||| | || || ||| ||||||||||||| || || Sbjct 37668 AAGCAGTTGGAGGATGGAAGGACTCTTTCGGACTACAACATCCAAAAAGAATCTACTCTA 37609 Query 178122 CATCTTGT 178129 || ||||| Sbjct 37608 CACCTTGT 37601 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || ||||| || || || || |||||||| || || Sbjct 38091 CAGATCTTCGTCAAGACTCTTACCGGAAAGACCATTACTCTTGAGGTGGAGTCTTCGGAT 38032 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| || || |||||||| || || ||||| || |||||||| Sbjct 38031 ACCATAGACAATGTGAAATCCAAAATCCAGGACAAGGAGGGTATCCCCCCAGACCAGCAG 37972 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||| | || ||||| | ||| | | || || || || Sbjct 37971 CGTCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGGCGCACTTTGTCGGACTACAATATC 37912 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| |||||||| Sbjct 37911 CAGAAGGAGTCTACACTTCATCTTGT 37886 Score = 123 bits (136), Expect = 6e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || || || ||||| || ||||| || ||||||| Sbjct 38595 CAAATCTTCGTTAAGACCCTTACCGGCAAGACCATCACTCTGGAGGTCGAGTCCTCAGAC 38536 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||||||||| || || || ||||| ||||| || Sbjct 38535 ACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAACAG 38476 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 || | || ||||| ||||| ||||| || || ||| | || || |||| || Sbjct 38475 CGTTTGATTTTCGCTGGAAAGCAGCTTGAGGACGGACGAACCCTGTCCGACTA 38423 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || ||||| || ||||||||||| || ||| || |||||||| || |||||||| Sbjct 38857 ACCGGAAAGACCATCACCCTCGAAGTTGAATCTTCGGACACCATTGACAACGTCAAGTCC 38798 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || |||||||| || || || || || ||||||||||| |||||||||||||| Sbjct 38797 AAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAGCAACGACTCATCTTCGCCGGAAAG 38738 Query 178065 CAGCTCGAAGATGGAAGGACTCT 178087 || || || || || | ||||| Sbjct 38737 CAACTTGAGGACGGCCGCACTCT 38715 >seq12 Length=702644 Score = 129 bits (142), Expect = 1e-24 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| || || || |||||||||||||| || || ||||| ||||| || |||||| Sbjct 574933 CTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACGATCGACAATGTCAAA 574992 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 || || ||||||||||| || ||||| || |||||||| ||| | || |||||||| Sbjct 574993 TCCAAAATCCAGGACAAAGAGGGTATCCCCCCAGACCAGCAGCGATTGATTTTCGCCGGG 575052 Query 178062 AAACAGCTCGAAGATGGAAGGACTCT 178087 ||||||||||| || || |||||||| Sbjct 575053 AAACAGCTCGAGGACGGCAGGACTCT 575078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730305477252