Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phanerochaete_20chrysosporium_20[genbank_20GCA_5F001910725.1_202016- 12-20] 174 sequences; 39,205,125 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq120 104 2e-17 seq98 89.7 5e-13 seq1 87.8 2e-12 >seq120 Length=2004100 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| ||| ||| || || ||||| || ||| Sbjct 1878648 CCACCACGGAGACGAAGCACGAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 1878707 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | ||| ||||| || || || || |||||||||| ||||| ||||| || Sbjct 1878708 AGGGTACGCCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 1878767 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| ||| || | | || | ||||||| | ||| ||| Sbjct 1878768 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCGATCGTGTCGGAAGACTCAACC 1878827 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||||||| | ||| || || || |||||||| Sbjct 1878828 TCGAGGGTAATCGTCTTGCCGGTGAGCGTCTTGACAAAGATTTGCAT 1878874 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/205 (71%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| |||||||| || |||||||| || || | |||| ||| || ||||| Sbjct 1878954 GTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGACCGTCCTCCAGCTG 1879013 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||||||||| | ||||| || ||||| || || || ||||| || ||||| ||| || Sbjct 1879014 CTTACCAGCAAA-ATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTT 1879072 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | || || | | ||| ||||| | || | |||||||||||| Sbjct 1879073 CGCCTTGACGTTGTCAATGGTATCCGAAGACTCGACCTCGAGCGTGATCGTCTTGCCGGT 1879132 Query 139741 CAACGTTTTTACGAATATTTGCATA 139765 || ||| || ||||| ||||||||| Sbjct 1879133 CAGCGTCTTCACGAAGATTTGCATA 1879157 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || ||||| || ||||| | |||| ||||||||||| || || Sbjct 1879188 GTAGACTCCTTCTGAATATTGTAATCCGAAAGCGTGCGGCCATCTTCGAGCTGCTTGCCG 1879247 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || ||||||| || |||||||| ||||| ||||| || ||||| ||| | || | || Sbjct 1879248 GCGAAGATCAGGCGCTGCTGATCTGGAGGAATGCCCTCCTTGTC-CTGAATCTTGGCCTT 1879306 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | |||||| | | ||| ||||||| ||| | |||||| || || | || Sbjct 1879307 GACGTTGTCGATTGTGTCCGACGACTCGACCTCAAGGGTGATCGTCTTACCCGTGAGGGT 1879366 Query 139747 TTTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 1879367 CTTGACGAAGATCTGCATA 1879385 >seq98 Length=2497588 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||||| ||| | ||||| ||| |||||||| || ||||| || ||| | Sbjct 2387745 CCGCCACGAAGACGCAGAACGAGGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGAC 2387686 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||||||||| || |||||| |||| || || |||||||| || || Sbjct 2387685 AGCGTGCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGATCAGGGGGG 2387626 Query 139658 AT 139659 || Sbjct 2387625 AT 2387624 >seq1 Length=2640167 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 52894 GGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATG 52953 ||||||||| ||| | |||||| | ||||||||||| || || ||| | ||| | | Sbjct 596347 GGCATGAACTCGAAGCTCATGTGCCAATACATCGAGTTCGTCGCCGACCGTCTGCTCGTC 596288 Query 52954 CAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATA 53013 ||||||| | ||| ||| || ||| ||||||||| || ||| ||| || Sbjct 596287 GCGCTCGGTGACGAGAAGGTCTACAACGCGACCAACCCCTTTGACTTCATGGACATGATC 596228 Query 53014 TCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 |||||| ||||||| || ||||| ||||||| || ||| ||| ||| Sbjct 596227 TCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGGGTGTCCGACTAC 596180 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 52617 CGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGC 52676 |||| | || |||||||||||| || ||||| | || || ||||| ||||||||| | Sbjct 599208 CGAAAGGCTTGTCGCGTTTGCTGCGGTCGAAGGAATATTCTTCTCGGGAAGTTTTGCGTC 599267 Query 52677 AATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGA 52735 |||||| | |||| || | |||| | |||||||||||||| || || ||| | | Sbjct 599268 AATATTCTGGCTCAAGAAGCGGGGGC-TCATGCCCGGCCTCACCTTCTCGAATGAGCTCA 599326 Query 52736 TATCGCGCGACGAAGGAATGCACACAGATTTTGCGTG 52772 | | ||||| || |||||||| || |||||||| Sbjct 599327 TCAGCAGAGACGAGGGCATGCACACCGACTTTGCGTG 599363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062921060800