Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phanerochaete_20chrysosporium_20[genbank_20GCA_5F001910725.1_202016- 12-20] 174 sequences; 39,205,125 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq120 98.7 8e-16 seq98 84.2 2e-11 >seq120 Length=2004100 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42913 GTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCG 42972 ||||||||||| || | ||||| ||||| | ||||| |||| || | ||| |||||| Sbjct 1878678 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGCCCGTCCTCGAGTTGCTTGCCG 1878737 Query 42973 GCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTG 43032 || || |||| ||||| || |||| ||| | ||||| || || |||| | ||| Sbjct 1878738 GCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTG 1878797 Query 43033 ACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTT 43092 || || | | |||||| || ||| || || | || || || || ||||| || || Sbjct 1878798 ACGTTGTCGATCGTGTCGGAAGACTCAACCTCGAGGGTAATCGTCTTGCCGGTGAGCGTC 1878857 Query 43093 TTCACAAAAATTTGCAT 43109 || ||||| |||||||| Sbjct 1878858 TTGACAAAGATTTGCAT 1878874 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 42907 TGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGT 42966 |||| |||| ||||| || | |||||||||||||| ||||| |||| || | || Sbjct 1879460 TGGAGAGTGGATTCCTTCTGAATGTTGTAATCGGACAACGTACGGCCGTCCTCGAGCTGC 1879519 Query 42967 TTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAAC 43026 ||||| |||||||| | ||||| || || | || | ||||| || || |||| Sbjct 1879520 TTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTG 1879579 Query 43027 TCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTT 43086 | || || | ||| |||||| || ||||| || | ||| || || || || || Sbjct 1879580 GCCTTCACATTATCAATGGTGTCGGAAGATTCGACCTCGAGCGTGATGGTCTTGCCCGTC 1879639 Query 43087 AGAGTTTTCACAAAAATTTGCAT 43109 || || || ||||| || ||||| Sbjct 1879640 AGGGTCTTGACAAAGATCTGCAT 1879662 >seq98 Length=2497588 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | |||||||| |||| || || |||| || | || ||||| || || Sbjct 2388447 CTCCTTCTGGATGTTGTAATCCGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAA 2388388 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTC 43036 ||||| ||||||||||| | || | || || || || ||| ||| | | ||||| Sbjct 2388387 GATCAAGCGCTGTTGATCAGGTGGGATGCCCTCCTTGTC-CTGAATCTTCGCCTTGACGT 2388329 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 || | | |||||| | |||||| || | ||| || || || ||||| || || || | Sbjct 2388328 TGTCGATAGTGTCGGACGACTCGACCTCCAGCGTAATGGTCTTGCCGGTAAGGGTCTTGA 2388269 Query 43097 CAAAAATTTGCAT 43109 |||| || ||||| Sbjct 2388268 CAAAGATCTGCAT 2388256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381368791258092