Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phanerochaete_20chrysosporium_20[genbank_20GCA_5F001910725.1_202016- 12-20] 174 sequences; 39,205,125 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 228 1e-54 seq119 87.8 3e-12 seq35 86.0 9e-12 >seq1 Length=2640167 Score = 228 bits (252), Expect = 1e-54 Identities = 401/579 (69%), Gaps = 9/579 (2%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| |||||||||| ||||| ||||||| || ||||| | || ||| | || || Sbjct 597076 ATTTGGCAAATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCTGAGGAGATGGACCTC 597017 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||| ||| | ||| | | || | |||||| | || || ||| Sbjct 597016 TCCAAGGATCTTCACGACTGGACCAACCGTCTCAACGACAACGAGCGATACTTCATCTCG 596957 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 || | | |||||||| |||| ||||| || || |||||||| || || || || || Sbjct 596956 CATGTCCTCGCCTTCTTCGCCGCGTCCGACGGTATTGTCAACGAAAACCTCGTCGAG-CG 596898 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 ||| | ||| || | | |||| ||||| ||||| ||||| |||||||| Sbjct 596897 TTTCAGCAACGAGGTGCAGGTCGCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 596838 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG-- 125315 |||||| | ||||| || | |||||| || ||||||| |||||| || ||| Sbjct 596837 GGAGAACATCCACTCCGAGACGTACTCCCTGCTCATTGACACGTACATCAAAGACCCGAA 596778 Query 125316 -CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 || || | ||| || || |||| ||||| || | || | || || ||||| Sbjct 596777 GCAGCGCGAGCACCTGTTCG---ACGCCATCGAGACCATCCCCTGCATTAAGAAGAAGGC 596721 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 | |||| | || |||||| |||| | || ||||| | ||| || | || || || Sbjct 596720 CGATTGGGCCCTCCGCTGGATCTCTGACAAGAAATCTTCCTTCGCTGAGCGCCTTGTCGC 596661 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494 ||||||||||| ||||| |||||||| || ||| || ||| ||||||| |||||||| Sbjct 596660 GTTCGCCGCCGTCGAGGGTATCTTCTTCTCTGGTTCCTTCGCGTCCATCTTCTGGCTCAA 596601 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 |||||| |||||||||||||| || || | |||||| | || | |||||||| Sbjct 596600 GAAGCGTGGACTCATGCCCGGTCTCACCTTCTCGAACGAGCTCATCAGCAGGGACGAGGG 596541 Query 125555 CCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT 125592 | | ||| ||||| ||| || || || ||||| || Sbjct 596540 CATGCACACCGACTTCGCCTGCCTCCTCTTCTCGCACCT 596502 Score = 134 bits (148), Expect = 2e-26 Identities = 373/563 (66%), Gaps = 18/563 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | ||||||||||| || ||||||| || ||||| | |||||| | || ||| Sbjct 598807 ATCTGGCAGATGTACAAAAAAGCAGAGGCCTCGTTCTGGACAGCAGAAGAGCTGGACCTG 598866 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTAT 125134 | ||||| || ||| | || ||| | | | |||| | || || Sbjct 598867 GGGCATGACCTCATGGACTGGAA----CGACAAACTCACCCAGGACGAGCGCCGTTTCAT 598922 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGA 125193 || ||| | | || ||||| |||| ||||| || || || ||||| || || ||||| Sbjct 598923 CTCCCACGTCCTTGCATTCTTCGCCGCGTCCGACGGCATTGTAAACGAGAACCTCGTTGA 598982 Query 125194 CACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT-GCTTTTACGGATTCCAAATC 125252 ||| ||||| | ||| | | |||| | |||| |||| ||||| ||||| || Sbjct 598983 -ACGCTTCTCAAACGAGGTACAGGCTGCAGAAGC-TCGTTGCTTCTACGGCTTCCAGATA 599040 Query 125253 ATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGAT 125312 ||||| |||||| | || ||||| | || || || ||||||| ||||| || Sbjct 599041 ATGATGGAGAACATACATTCGGAGACATATTCCCTCCTAATTGACACCTACATCAAGGAC 599100 Query 125313 CCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAG 125372 || ||| | | || || |||| || || || | |||| || || ||| Sbjct 599101 CCTCAAGAGCGCGAGTTTCTGTTCGACGCGATAGAGACCATCCCGTGCATCAAGAAGAAG 599160 Query 125373 GCTCAATGGGTGATTCGGTGGATCGATGACGACAAG---TCTTCGTACGCCGACAGACTG 125429 || | |||| | || |||||| | | |||||| || || | || ||| || || Sbjct 599161 GCCGACTGGGCCCTGCGCTGGATC--TCA-GACAAGCGATCATCATTCGGCGAAAGGCTT 599217 Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || || || || || || || || || ||||| ||||| ||||||||| | || || ||| Sbjct 599218 GTCGCGTTTGCTGCGGTCGAAGGAATATTCTTCTCGGGAAGTTTTGCGTCAATATTCTGG 599277 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 ||||||||||| || ||||||||||| || || | || ||| | || ||||| Sbjct 599278 CTCAAGAAGCGGGGGCTCATGCCCGGCCTCACCTTCTCGAATGAGCTCATCAGCAGAGAC 599337 Query 125550 GAGGGCCTACACTGTGACTTTGC 125572 |||||| | ||| |||||||| Sbjct 599338 GAGGGCATGCACACCGACTTTGC 599360 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 125700 ATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTG 125759 ||||||||||||| ||||| |||||| | ||||| ||||| || || || ||||| || Sbjct 596350 ATTGGCATGAACTCGAAGCTCATGTGCCAATACATCGAGTTCGTCGCCGACCGTCTGCTC 596291 Query 125760 TACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGC 125819 || | | || | ||| | |||||||| | || |||||||| |||||| || Sbjct 596290 GTCGCGCTCGGTGACGAGAAGGTCTACAACGCGACCAACCCCTTTGACTTCATGGACATG 596231 Query 125820 ATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 || || || |||| ||||||||||| ||||||||| Sbjct 596230 ATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAG 596195 >seq119 Length=122805 Score = 87.8 bits (96), Expect = 3e-12 Identities = 236/353 (67%), Gaps = 16/353 (5%) Strand=Plus/Minus Query 125217 ATTCCAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGA 125275 || ||||| ||| || || || || |||||||||||||| || ||||| | || | || Sbjct 64342 ATCCCAGAAGTG-CGAGCCTTCTATGGATTCCAAATCATAATCGAGAATATTCAAGCAGA 64284 Query 125276 AATGTACTCTACACTGATT--GACATGTACATTCGCGA---TCCGCAACGTAAACACATG 125330 |||||||||| ||| ||| ||||| | | | || | | | ||||| ||| Sbjct 64283 AATGTACTCTGAACTCATTCAGACATTT--TTGGGAGACCCTACCCGTCGTAATCAC--- 64229 Query 125331 CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGG 125390 ||||| | || ||| |||| | || || |||| | | || || ||||||| | | | Sbjct 64228 CTCTTCCATGCTATCCACACCATACCATCCATACATCAGAAAGCACAATGGGCATTGCCG 64169 Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 |||||||| |||| ||| || | ||| | ||| || |||| ||| || || || Sbjct 64168 TGGATCGAGGACGGGAAGGCTAGCTTTGCCCAAAGATTGCTGGCGTTCACCATTGTCGAA 64109 Query 125451 GGCATCTTCTTTTCGGGTAGT--TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCA 125508 ||| | ||||| || | || ||||| ||||| || ||| | | |||| | | | Sbjct 64108 GGCGTTTTCTTCTC--TTTGTCCTTTGCAGCCATATTCTGGATGCACAAGCACAGCTTAC 64051 Query 125509 TGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACAC 125561 | || ||||| || ||||| | || |||||||||| || |||||| Sbjct 64050 TCCCAGGACTATGTCATTCAAACGATCTAATTGCTCGAGACGAAGGACTACAC 63998 >seq35 Length=923662 Score = 86.0 bits (94), Expect = 9e-12 Identities = 189/280 (68%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 97944 CTCAATCTGTGGAACGATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAA 98003 ||||| || ||| | || ||||| | ||||||| |||||| || || ||||| Sbjct 865592 CTCAAGCTCTGGGATGACAACATGAAGAACATGATCATCGCCAACAACGGCTCGATTCAG 865533 Query 98004 AACATTACCATCATCCCGGAAGAGTT----GCGCAGAATCTACAAGACTGTCTGGGAGAT 98059 | ||| | | ||| || || ||| | ||| ||||||||||||||||||||||| Sbjct 865532 AGCATCAACGGCATTCCTGACGAGATCAAGGCG----ATCTACAAGACTGTCTGGGAGAT 865477 Query 98060 TCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCA 98119 || |||| | | |||| | || || ||| | || | | ||| |||||| || Sbjct 865476 CTCGCAGAAGAAGGTCCTCGACCTCGCCGCAGACCGTGGCGCGTTCATCTGCCAGAGCCA 865417 Query 98120 ATCGTTCAATCTGTACGTTGCCGAGCCCACCTA-CAGTCGTATGACTTCGATACACTTTT 98178 || || || || | || |||||| | | | | | |||| || ||||| | Sbjct 865416 GAGCTTGAACGTGCACCT-GCAGAGCCCGACGATCGGCCAGCTGACGAGCATGCACTTCT 865358 Query 98179 ACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCT 98218 ||| ||||| |||||||||||||| ||||||||||| || Sbjct 865357 ACGGTTGGAAGAAGGGCCTCAAGACCGGCATGTACTACCT 865318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057588196240