Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phanerochaete_20chrysosporium_20[genbank_20GCA_5F001910725.1_202016- 12-20] 174 sequences; 39,205,125 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq120 131 4e-25 seq98 116 9e-21 seq1 84.2 5e-11 >seq120 Length=2004100 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| |||||||| || || || || | || | ||||| || || || || ||| Sbjct 1879466 GTGGATTCCTTCTGAATGTTGTAATCGGACAACGTACGGCCGTCCTCGAGCTGCTTGCCA 1879525 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| || || ||||| || ||||| || ||||| ||||| || || Sbjct 1879526 GCAAAAATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 1879585 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| || ||| ||||| || || || ||||| || || || || Sbjct 1879586 ACATTATCAATGGTGTCGGAAGATTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTC 1879645 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 1879646 TTGACAAAGATCTGCAT 1879662 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||||| || ||||||||||| || || || || || | || || Sbjct 1879172 AAGGACAAGGTGGAGGGTAGACTCCTTCTGAATATTGTAATCCGAAAGCGTGCGGCCATC 1879231 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || || || || || || || | ||| ||||| ||||| || || || || || Sbjct 1879232 TTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCTGGAGGAATGCCCTCCTTGTC 1879291 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || || || || | || || | || ||||| || || || || Sbjct 1879292 CTGAATCTTGGCCTTGACGTTGTCGATTGTGTCCGACGACTCGACCTCAAGGGTGATCGT 1879351 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || || || || || || |||||||| Sbjct 1879352 CTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 1879384 >seq98 Length=2497588 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || || || | |||||| || || || || ||| Sbjct 2388452 GTCGACTCCTTCTGGATGTTGTAATCCGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCA 2388393 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | |||||||||||| || || || || || ||||||||||| || || Sbjct 2388392 GCGAAGATCAAGCGCTGTTGATCAGGTGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTG 2388333 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| | || ||||| || ||||| ||||| || ||||| || Sbjct 2388332 ACGTTGTCGATAGTGTCGGACGACTCGACCTCCAGCGTAATGGTCTTGCCGGTAAGGGTC 2388273 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 2388272 TTGACAAAGATCTGCAT 2388256 >seq1 Length=2640167 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || || ||||| || || ||||| ||||| || || || || || | ||||| ||| Sbjct 596665 GTCGCGTTCGCCGCCGTCGAGGGTATCTTCTTCTCTGGTTCCTTCGCGTCCATCTTCTGG 596606 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 | ||||| | || || ||||| || | || ||||| ||||| | || ||||||||| Sbjct 596605 CTCAAGAAGCGTGGACTCATGCCCGGTCTCACCTTCTCGAACGAGCTCATCAGCAGGGAC 596546 Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283 || || | ||| ||||||||| || Sbjct 596545 GAGGGCATGCACACCGACTTCGCCTG 596520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151395833101192