Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phanerochaete_20chrysosporium_20[genbank_20GCA_5F001910725.1_202016- 12-20] 174 sequences; 39,205,125 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 342 1e-88 seq35 154 3e-32 >seq1 Length=2640167 Score = 342 bits (378), Expect = 1e-88 Identities = 473/649 (73%), Gaps = 26/649 (4%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| ||||||||| |||||||| ||||| ||||||| Sbjct 597067 ATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCTGAGGAGATGGACCTCTCCAAGGAT 597008 Query 42369 ACGGCCGGCTGGGAGTCACTGTCT----GAGAACGAAAAGTTTTTCCTCAAAAACATACT 42424 || |||| | || |||| || ||||| | ||| || | | || Sbjct 597007 CTTCACGACTGG-ACCAACCGTCTCAACGACAACGAGCGATACTTCATCTCGCATGTCCT 596949 Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484 |||||||||||||| || ||||| || ||||| || ||||| | | | |||| || Sbjct 596948 CGCCTTCTTCGCCGCGTCCGACGGTATTGTCAACGAAAACCTCGTCGAGCGTTTCAGCAA 596889 Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 ||||||||| | |||||| ||||||||||||||||||||||| || |||||| | Sbjct 596888 CGAGGTGCAGGTCGCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGATGGAGAACAT 596829 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCG-AGC 42600 ||||| ||| |||| || ||||||| ||||||||||| || |||| | ||| Sbjct 596828 CCACTCCGAGACGTACTCC---CTGCTCATTGACACGTACATCAAAGA-CCCGAAGCAGC 596773 Query 42601 GTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGG 42660 | | |||||| | ||||| ||||| || |||||||| ||||||||||| || |||| Sbjct 596772 GCGAGCACCTGTTCGACGCCATCGAGACCATCCCCTGCATTAAGAAGAAGGCCGATTGGG 596713 Query 42661 CGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTTTACC 42719 | ||| ||||||| | | || | | |||| ||| | || || || || || Sbjct 596712 CCCTCCGCTGGATCTCT-GACAAGAAATCTTCCTTCGCTGAGCGCCTTGTCGCGTTCGCC 596654 Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA- 42778 ||||||||||| ||||||||||| || ||||||| |||||||||||||||||| || Sbjct 596653 GCCGTCGAGGGTATCTTCTTCTCTGGTTCCTTCGCGTCCATCTTCTGGCTCAAGAAGCGT 596594 Query 42779 GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCA 42838 || || |||||||| ||||||||||||||||| |||||||||||||||||||| |||| Sbjct 596593 GGACTC-ATGCCCGGTCTCACCTTCTCGAACGAGCTCATCAGCAGGGACGAGGGCATGCA 596535 Query 42839 TAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC---AGGCACAAGCCCTCGAAGGA 42895 | ||||| ||||||||||| |||||| |||||| |||| || | | || Sbjct 596534 CACCGACTTCGCCTGCCTCCTCTTCTCG---CACCTCAAGAGGCGGCCGCACCC---TGA 596481 Query 42896 GCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944 ||||| ||| ||||||||||||| | ||||||| |||||||| Sbjct 596480 CGTCGTCCGCAGGATCGTCACGGAGGCCGTCGCGATCGAGCAGGAGTTC 596432 Score = 260 bits (288), Expect = 3e-64 Identities = 378/529 (71%), Gaps = 5/529 (1%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || ||||||||||| || |||||||| || || |||||||| | | ||| Sbjct 598933 CTTGCATTCTTCGCCGCGTCCGACGGCATTGTAAACGAGAACCTCGTTGAACGCTTCTCA 598992 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || ||||| ||| || || || ||||||||||||||||||||| || |||||| Sbjct 598993 AACGAGGTACAGGCTGCAGAAGCTCGTTGCTTCTACGGCTTCCAGATAATGATGGAGAAC 599052 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | || || ||| || || || | |||| |||||| ||| || ||||| Sbjct 599053 ATACATTCGGAGACATATTCCCTCCTAATTGACACCTACATCAAGGACCCTCAAGAGCGC 599112 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | |||||| | || || ||||| || || ||||||||||||||||| |||||||| Sbjct 599113 GAGTTTCTGTTCGACGCGATAGAGACCATCCCGTGCATCAAGAAGAAGGCCGACTGGGCC 599172 Query 42663 CTCAACTGGATCG-AGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 || ||||||| ||| ||| || | |||||||| ||||| || || ||| | || Sbjct 599173 CTGCGCTGGATCTCAGACAAGCGAT-CATCATTCGGCGAAAGGCTTGTCGCGTTTGCTGC 599231 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 ||||| || || ||||||||||| || || || || |||||||||||| || || Sbjct 599232 GGTCGAAGGAATATTCTTCTCGGGAAGTTTTGCGTCAATATTCTGGCTCAAGAAGCGGGG 599291 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 | |||||||| |||||||||||||| || ||||||||||| |||||||| |||| | Sbjct 599292 GCTCATGCCCGGCCTCACCTTCTCGAATGAGCTCATCAGCAGAGACGAGGGCATGCACAC 599351 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901 |||||||| |||||| |||| || |||||||| | | ||| ||| || Sbjct 599352 CGACTTTGCGTGCCTCTTGTT-TC--ACCACCTCAAGAGGAGGCCACATCCGGACGTCGT 599408 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACG 42950 || ||| ||| |||| ||||| || | ||||| ||||| ||||| ||| Sbjct 599409 CCAGGCGATCGTCACCGAGGCGGTTGCAATCGAAAAGGAATTCCTGACG 599457 Score = 114 bits (126), Expect = 2e-20 Identities = 139/187 (74%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTC 43016 |||||||| | || | ||||||||| | ||||||||| | |||||| ||| |||| Sbjct 596365 CTGCCCGTCGCGCTCATTGGCATGAACTCGAAGCTCATGTGCCAATACATCGAGTTCGTC 596306 Query 43017 GCCGACCATCTCCTGTGCCAGATGGGTCTC-AGCCGCCTCTACAACACGCCGTGCCCCTT 43075 ||||||| ||| || | | | ||| | || | |||||||| || | |||||| Sbjct 596305 GCCGACCGTCTGCTCGTCGCGCTCGGTGACGAGAAGG-TCTACAACGCGACCAACCCCTT 596247 Query 43076 CGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGC 43135 ||||| ||||| | |||||| | |||||||||||||||| ||||||||||| || | Sbjct 596246 TGACTTCATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGGGTGTC 596187 Query 43136 CGACTAC 43142 ||||||| Sbjct 596186 CGACTAC 596180 >seq35 Length=923662 Score = 154 bits (170), Expect = 3e-32 Identities = 403/613 (66%), Gaps = 24/613 (4%) Strand=Plus/Plus Query 244340 CCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCG 244399 |||||||| ||| ||| ||||||||||||| || | | | |||| | |||| || Sbjct 865910 CCCTCGTAAGTCTCGTAAGGACCGTCGCGCTCAGCGATGTCGCTGCTCGCCTCGACTGCC 865969 Query 244400 GCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAG 244459 || | |||||||||||||||||| |||||||| ||| |||| | || ||| Sbjct 865970 GCATGATAGATGGTCTCGAAGATCTGCTTGTTCAGCAGGCGCGCCTCGGGAGAGTCGAAC 866029 Query 244460 GGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTG 244519 || |||| | ||||||| | || || || || | ||| ||||| || || || | | Sbjct 866030 GGCATGCGAAGGGCCATGAAGGCATCAGCAAGACCGTTCACACCGATACCAATCGGGCGG 866089 Query 244520 TGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTG 244579 || ||| ||||| ||| || || || | ||||| ||||| |||| || | | Sbjct 866090 TGGCGCATGTTGCTGCGACGAGCCTCAGGGATCGGGTAGTAGTTGACGTCAATGATGCGG 866149 Query 244580 TTGAGGTTGCGGGTGATCA--TGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGT 244637 || |||||| || | | | || || ||| |||| || |||| ||||| | Sbjct 866150 TTAAGGTTGTAGGCAACAACCTTCGT--GATATCGTGCAGCTTTTGGAAGTTGTACTTGC 866207 Query 244638 AGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGC 244697 | | |||| || || | ||| |||| || ||||||| Sbjct 866208 CG---TTCTCGATGAAGGAGGG---------------GAGAGCGATAGACGCAAGGTTGC 866249 Query 244698 AGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACT 244757 | || || |||||| | | ||||| || ||||| ||||| ||||| ||| Sbjct 866250 AAACAGCGGTCTCCTCGGGTGAAGAGTACTCGATGATCTCCGTGCACAGGTTTGACGACT 866309 Query 244758 TGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGA 244817 |||||||||| |||| ||| || || ||||| || ||| | |||||||||||||||| Sbjct 866310 TGATGGTGCCGAGGTTCTGCTGGTTAGACTTCGCATTGGCAGAATCCTTGTAGAGCATGA 866369 Query 244818 AGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGA 244877 |||| || || ||||||| || || | || | | ||| || | | |||| || Sbjct 866370 AGGGTCCACCAGTCTCGATTTGCGCCTCCAGAATAGCATACCAAAGCTTCTGCGCCTCGA 866429 Query 244878 CCGTCCTGCGAGCCTTG-CCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGG 244936 ||| |||| ||| | ||||| ||||||||| |||||| |||||||||| | Sbjct 866430 TGGTCTTGCG-GCCGCGACCCTCGCGCTCGTAGCGCTCGTACAGCTCCTCGAACTCAGCT 866488 Query 244937 CCCCAGACCTCGT 244949 |||||||| |||| Sbjct 866489 CCCCAGACTTCGT 866501 Score = 93.3 bits (102), Expect = 8e-14 Identities = 163/237 (69%), Gaps = 8/237 (3%) Strand=Plus/Plus Query 245015 AAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCA 245074 ||||| ||||| ||||| || || | ||||||||| | || | ||| ||| ||| Sbjct 866619 AAGAGATCGGGAATCCACAGCGCGTAGAAGAGGTCGCGGGCACGAACCTCCTCCTTACCA 866678 Query 245075 GTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACA 245134 ||||| | || || | ||||| |||| ||| ||||||||||||| | ||||| Sbjct 866679 TGATTCTTACGGAGGTCGATGAAGTCGAAGATATCGGCGTGCCAGGGCTCGAGGTAGATG 866738 Query 245135 GCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTT 245190 |||| || || || ||||| ||||| |||||||| | | | ||||| |||| Sbjct 866739 GCGAAAGCACCCGGACGCTTATTGCCACCCTGGTCGA----CATAGCGAGCCGTTGCGTC 866794 Query 245191 GAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTA 245247 | | ||| || | || || ||||| || || | |||||| ||||| |||||| Sbjct 866795 GTAAGCGCGAAGCATGGGAACAATGCCATTCGAATAGCCGTTCGTGCCGGCGATGTA 866851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337146062240