Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phanerochaete_20chrysosporium_20[genbank_20GCA_5F001910725.1_202016- 12-20] 174 sequences; 39,205,125 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq120 129 6e-25 seq98 125 7e-24 seq1 89.7 5e-13 >seq120 Length=2004100 Score = 129 bits (142), Expect = 6e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || |||||||||||||| | |||||| ||| || ||||| || || Sbjct 1879188 GTAGACTCCTTCTGAATATTGTAATCCGAAAGCGTGCGGCCATCTTCGAGCTGCTTGCCG 1879247 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| ||||||||||| ||||| ||||||||||||||| || || |||| Sbjct 1879248 GCGAAGATCAGGCGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 1879307 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||||| |||||| || | ||| | ||| || || || || || Sbjct 1879308 ACGTTG-TCGATTGTGTCCGACGACTCGACCTCAAGGGTGATCGTCTTACCCGTGAGGGT 1879366 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 1879367 CTTGACGAAGATCTGCAT 1879384 Score = 113 bits (124), Expect = 4e-20 Identities = 146/198 (74%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||| ||||| || | |||||| || || ||||| || ||| Sbjct 1878961 GTAGACTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGACCGTCCTCCAGCTGCTTACCA 1879020 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | |||| |||||||| || || || |||||||||||||| ||| ||| |||| Sbjct 1879021 GCAAA-ATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTG 1879079 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | ||| |||| | |||||| |||| || | ||| ||||||||||| || Sbjct 1879080 ACGTTG-TCAATGGTATCCGAAGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGCGT 1879138 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 1879139 CTTCACGAAGATTTGCAT 1879156 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||||||| | ||||| ||| || ||||| || || Sbjct 1879746 GTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCG 1879805 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| || || || ||||||||||||||| ||| || |||| Sbjct 1879806 GCAAAGATGAGACGCTGCTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 1879865 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||| | |||||| |||| ||| | || ||||| || ||||| Sbjct 1879866 ACGTTG-TCGATAGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGAGT 1879924 Query 127096 TTTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 1879925 CTTCACGAATATCTGCATG 1879943 >seq98 Length=2497588 Score = 125 bits (138), Expect = 7e-24 Identities = 151/203 (74%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || |||||||| || |||||| || || ||||| || || Sbjct 2388453 CGTCGACTCCTTCTGGATGTTGTAATCCGACAGGGTGCGACCGTCCTCGAGCTGCTTGCC 2388394 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 |||| ||||||| ||||| ||||| || || ||||||||||||||| || ||| ||| Sbjct 2388393 AGCGAAGATCAAGCGCTGTTGATCAGGTGGGATGCCCTCCTTGTCCTGAATCTTCGCCTT 2388334 Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 || |||| |||| ||||| | |||||| || | || | || |||||||| || | Sbjct 2388333 GACGTTG-TCGATAGTGTCGGACGACTCGACCTCCAGCGTAATGGTCTTGCCGGTAAGGG 2388275 Query 127095 TTTTTACAAAAATCTGCATGGCT 127117 | || ||||| ||||||||| || Sbjct 2388274 TCTTGACAAAGATCTGCATGCCT 2388252 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | || | ||| | ||| ||||| || || || ||||| ||| Sbjct 2388254 CCTCCGCGGAGACGAAGAACGAGATGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAT 2388195 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || | ||| || |||||| |||| | || || ||||| || || Sbjct 2388194 AGGGTGCGTCCGTCCTCCAACTGCTTGCCAGCGAAGATGAGGCGTTGTTGATCTGGCGGG 2388135 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| ||| ||| ||| ||| | |||| || | || |||| |||||| Sbjct 2388134 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTG-TCAATCGTATCCGACGACTCGAC 2388076 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || | ||| | || |||||||| || || || ||||| ||||||||| || Sbjct 2388075 CTCCAAGGTGATGGTCTTGCCGGTAAGTGTCTTGACAAAGATCTGCATGCCT 2388024 >seq1 Length=2640167 Score = 89.7 bits (98), Expect = 5e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 47388 GAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAA 47447 || |||||||||| | | | || |||||| || || | ||| | | |||||||| Sbjct 596371 GATGCTCTGCCCGTCGCGCTCATTGGCATGAACTCGAAGCTCATGTGCCAATACATCGAG 596312 Query 47448 TTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAAT 47507 || ||||||||||| |||||||| ||| | ||| | ||| || | || Sbjct 596311 TTCGTCGCCGACCGTCTGCTCGTCGCGCTCGGTGACGAGAAGGTCTACAACGCGACCAAC 596252 Query 47508 CCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGC 47567 || || || || ||| ||| || |||||| |||||||||||||||| ||||||||||| Sbjct 596251 CCCTTTGACTTCATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGG 596192 Query 47568 GT 47569 || Sbjct 596191 GT 596190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499765785760