Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phanerochaete_20chrysosporium_20[genbank_20GCA_5F001910725.1_202016- 12-20] 174 sequences; 39,205,125 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq98 96.9 4e-15 seq68 96.9 4e-15 seq1 89.7 6e-13 >seq98 Length=2497588 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 ||||| || ||||| | ||||||||| || || || | ||| || ||||||| Sbjct 1730154 GCATCGATTTCATCCACGAAGACAATGCACGGCGCGTTCTTCTTGGCCATGGCAAAGAGG 1730095 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCAC 11749 || || || | || || ||||| || ||||| || || || | | | | || ||| Sbjct 1730094 TCCCGGACGCGAGAGGAGCCGACACCGACGAACATTTCGACGAACTCGGAGCCGGA-CAC 1730036 Query 11750 TGGAT-GAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGT 11808 | | ||| |||||||| | ||| |||||| ||||| ||||||||||||||| || || Sbjct 1730035 GGAAAAGAAGGGGACATTGGCTTCGCCCGCGGTGGCTTTGGCGAGGAGGGTCTTACCAGT 1729976 Query 11809 ACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 ||| || ||| | |||| ||| || || || ||||| ||||| Sbjct 1729975 ACCGGGAGGACCGGAAAGAATGGCACCGCGAGGAATCTTAGCACC 1729931 >seq68 Length=814117 Score = 96.9 bits (106), Expect = 4e-15 Identities = 144/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 9156 CGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAAC 9215 ||| |||| |||||||| | || ||| ||| || |||||| ||| | || || | | Sbjct 243444 CGCTTCTACCAAGCCTCGACATCTGAGCTGTACGGAAAGGTTGTCGAGACGCCGCAGAGC 243503 Query 9216 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 9275 ||| ||| ||||||||||| |||||| ||||| ||| | ||| | || | ||| Sbjct 243504 GAGACGACGCCCTTCTACCCGCGCTCGCCGTACGGTGTCGCGAAGCTGTACGCGTACTGG 243563 Query 9276 CTC---GTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTC 9332 || ||| || ||||||||| | ||||| ||| |||||| ||| ||||||||| Sbjct 243564 ATCACGGTC---AACTACCGCGAGGCGTACGGCATGTACGCGTGCAACGGCATCCTCTTC 243620 Query 9333 AACCATGAATCACCGAGACGAGG 9355 ||||| || || ||| | || || Sbjct 243621 AACCACGAGTCGCCGCGGCGCGG 243643 >seq1 Length=2640167 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/218 (70%), Gaps = 8/218 (4%) Strand=Plus/Plus Query 122692 ATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCTTCAACCAATAAATA 122751 || || || || |||||| ||||| |||||||| || |||||||| | ||| | || Sbjct 596556 ATGAGCTCGTTCGAGAAGGTGAGACCGGGCATGAGTCCACGCTTCTTGAGCCAGAAGATG 596615 Query 122752 G-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGCAAAAAGGCGTTC 122810 | ||| ||| || || ||||||||||||||||| || || ||||| | |||||| || Sbjct 596616 GACGC-GAAGGAACCAGAGAAGAAGATACCCTCGACGGCGGCGAACGCGACAAGGCGCTC 596674 Query 122811 GGCGAAGGAGCGAGA---CTTTGCATCAAACCATTTCATTGCCCATTTCGCCTTCTTCTC 122867 |||||||| ||| ||| || | ||| | ||||| | |||||||||| Sbjct 596675 AGCGAAGGA---AGATTTCTTGTCAGAGATCCAGCGGAGGGCCCAATCGGCCTTCTTCTT 596731 Query 122868 AATACATGGTACAGTTTGGATGGCTTCAAATAACTGCT 122905 ||| || || | || | |||||| || || | |||| Sbjct 596732 AATGCAGGGGATGGTCTCGATGGCGTCGAACAGGTGCT 596769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030634030400