Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phanerochaete_20chrysosporium_20[genbank_20GCA_5F001910725.1_202016- 12-20] 174 sequences; 39,205,125 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq98 185 1e-41 seq120 176 5e-39 seq35 147 2e-30 seq68 132 5e-26 seq1 82.4 9e-11 >seq98 Length=2497588 Score = 185 bits (204), Expect = 1e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || |||||| | || || ||||| || ||||| ||||| ||||| | Sbjct 2388484 ATGCAAATTTTCGTGAAGACGTTGACGGGAAAGACCATCACTCTGGAGGTGGAGTCTTCT 2388543 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||||| || || |||||||||||||| ||||| ||||||||| Sbjct 2388544 GATACGATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 2388603 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || ||||| || |||||||| ||||||| |||||||| |||||||||| Sbjct 2388604 CAGCGGTTGATCTTTGCGGGGAAGCAACTTGAGGATGGGCGTACCCTTTCAGACTATAAC 2388663 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| ||||| || ||||| || | || || || ||||| || Sbjct 2388664 ATCCAGAAGGAGTCCACGCTCCATCTCGTGCTTCGCCTCCGTGGTGGTCA 2388713 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| |||||||||||||| || || | ||||| ||||| Sbjct 2388028 ATGCAGATCTTTGTCAAGACACTTACCGGCAAGACCATCACCTTGGAGGTCGAGTCGTCG 2388087 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || ||||||| || || ||||| |||||||| || || ||||| || Sbjct 2388088 GATACGATTGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCGCCAGATCAA 2388147 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || || || ||||| ||||| | ||||| | || |||||| | ||||| || Sbjct 2388148 CAACGCCTCATCTTCGCTGGCAAGCAGTTGGAGGACGGACGCACCCTATCCGACTACAAC 2388207 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| |||||||| || | ||||| ||||| || Sbjct 2388208 ATCCAGAAGGAGTCCACGCTTCATCTCGTTCTTCGTCTCCGCGGAGG 2388254 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| |||||||||||||| ||||| || ||||| ||||| Sbjct 2388256 ATGCAGATCTTTGTCAAGACCCTTACCGGCAAGACCATTACGCTGGAGGTCGAGTCGTCC 2388315 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || ||||||||||||||||| || || || || || Sbjct 2388316 GACACTATCGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGCATCCCACCTGATCAA 2388375 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || ||||| ||||| |||||||| | ||| ||||| | || || || Sbjct 2388376 CAGCGCTTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGTCGGATTACAAC 2388435 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || ||| | || || ||||| || Sbjct 2388436 ATCCAGAAGGAGTCGACGCTCCACCTTGTCCTCCGCCTCCGCGGCGG 2388482 >seq120 Length=2004100 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||| Sbjct 1878874 ATGCAAATCTTTGTCAAGACGCTCACCGGCAAGACGATTACCCTCGAGGTTGAGTCTTCC 1878815 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || || |||||||| || || || || |||||| Sbjct 1878814 GACACGATCGACAACGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCGCCCGACCAG 1878755 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || |||||||||||||| | |||||||| | ||||| || Sbjct 1878754 CAGCGTCTGATCTTCGCCGGCAAGCAACTCGAGGACGGGCGTACCCTCTCCGACTACAAC 1878695 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||| ||||| || || | ||||| || ||||| Sbjct 1878694 ATCCAGAAGGAGAGCACGCTTCACCTCGTGCTTCGTCTCCGTGGTGG 1878648 Score = 174 bits (192), Expect = 2e-38 Identities = 162/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || || ||||| || || Sbjct 1879662 ATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACCATCACGCTCGAGGTCGAATCTTCC 1879603 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || ||||||||||| || |||||||| |||||| Sbjct 1879602 GACACCATTGATAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGACCAG 1879543 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||||||||| ||||| |||||||| | ||||| | | || || || Sbjct 1879542 CAGCGTCTCATTTTTGCTGGCAAGCAGCTCGAGGACGGCCGTACGTTGTCCGATTACAAC 1879483 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || |||||||||||||| || || Sbjct 1879482 ATTCAGAAGGAATCCACTCTCCACCT 1879457 Score = 165 bits (182), Expect = 9e-36 Identities = 161/206 (78%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || |||||||| ||||||||||| || || || ||||| ||||| Sbjct 1879156 ATGCAAATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCTTCG 1879097 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || | ||||| || || || ||||||||||| ||||| ||||||||| Sbjct 1879096 GATACCATTGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAG 1879037 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || | ||||||||||||||| || ||||| | ||| || || | ||||| || Sbjct 1879036 CAGCGCCTGA-TTTTGCTGGTAAGCAGCTGGAGGACGGTCGCACTCTTTCGGACTACAAC 1878978 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || ||||| || || ||||| || Sbjct 1878977 ATTCAGAAGGAGTCTACCCTTCACCT 1878952 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| || || |||||||| ||||| Sbjct 1879384 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATCACCCTTGAGGTCGAGTCGTCG 1879325 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || ||||||||||||||||| ||||||||||| ||| Sbjct 1879324 GACACAATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCAGATCAG 1879265 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| ||||| |||| || || || | || || ||| Sbjct 1879264 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACGCTTTCGGATTACAAT 1879205 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || || || || ||| | ||||| || ||||| Sbjct 1879204 ATTCAGAAGGAGTCTACCCTCCACCTTGTCCTTCGTCTCCGTGGTGG 1879158 Score = 147 bits (162), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || |||||||| || || || ||||| ||||| | Sbjct 1879942 ATGCAGATATTCGTGAAGACTCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 1879883 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || |||||||||||||| ||||| ||||||||| Sbjct 1879882 GACACTATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCACCAGACCAG 1879823 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| || ||||||| || ||||| | || || || Sbjct 1879822 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGATTACAAC 1879763 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| ||||| || || || Sbjct 1879762 ATCCAGAAGGAGTCCACCCTCCACCT 1879737 >seq35 Length=923662 Score = 147 bits (162), Expect = 2e-30 Identities = 361/545 (66%), Gaps = 8/545 (1%) Strand=Plus/Plus Query 80571 CGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACTC 80630 ||||||||| ||| || | |||||||| || || || || || | || | | | Sbjct 865900 CGCCGGAGAACCCTCGTAAGTCTCGTAAGGACCGTCGCGCTCAGCGATGTCGCTGCTCGC 865959 Query 80631 CATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGG 80690 | | ||||| ||||| ||| ||| |||| |||||||| |||||||| || Sbjct 865960 CTCGACTGCCGCATGATAGATGGTCTCGAAGATCTGCTTGTTCAGCAGGCGCGCCTCGGG 866019 Query 80691 GTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGC 80750 |||||||| || || | |||||| | ||||| || || | || ||||| | Sbjct 866020 AGAGTCGAACGGCATGCGAAGGGCCATGAAGGCATCAGCAAGACCGTTCACACCGATACC 866079 Query 80751 GATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATC 80810 ||||||||||||||| |||| || ||||| || || ||||| |||| || Sbjct 866080 AATCGGGCGGTGGCGCATGTTGCTGCGACGAGCCTCAGGGATCGGGTAGTAGTTGACGTC 866139 Query 80811 GATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTC 80870 |||| |||||| |||||| | ||||||| || | ||| || || || || |||| Sbjct 866140 AATGATGCGGTTAAGGTTGTAGGCAACAACCTTCGTGATATCGTGCAGCTTTTGGAAGTT 866199 Query 80871 GAATTGGTTCCCCTTCACAAATGCCGGAAGGCTCAG----GGACGCCAGATTGCACACGG 80926 | | || || ||| | ||| ||| || || ||||| || ||||| || | Sbjct 866200 G---TACTTGCCGTTCTC-GATGAAGGAGGGGAGAGCGATAGACGCAAGGTTGCAAACAG 866255 Query 80927 CCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTG 80986 | ||| || | | |||||| ||| |||||||||| || || ||||| || | Sbjct 866256 CGGTCTCCTCGGGTGAAGAGTACTCGATGATCTCCGTGCACAGGTTTGACGACTTGATGG 866315 Query 80987 TACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGG 81046 | || ||||| | |||||| ||||| || ||| || ||||||||| |||| | || Sbjct 866316 TGCCGAGGTTCTGCTGGTTAGACTTCGCATTGGCAGAATCCTTGTAGAGCATGAAGGGTC 866375 Query 81047 TACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCT 81106 ||| ||||||| || | || || || || | ||||| || |||||| || || Sbjct 866376 CACCAGTCTCGATTTGCGCCTCCAGAATAGCATACCAAAGCTTCTGCGCCTCGATGGTCT 866435 Query 81107 TGCGG 81111 ||||| Sbjct 866436 TGCGG 866440 >seq68 Length=814117 Score = 132 bits (146), Expect = 5e-26 Identities = 347/530 (65%), Gaps = 7/530 (1%) Strand=Plus/Plus Query 24584 CGAGGTCTATAACCTAGGTGCCCAGTCACACGTCAAGCTGTCGTTTGACCAACCCGAGTA 24643 ||| ||||| ||||| || || ||||||||||| ||| | |||||||| ||||||| Sbjct 243308 CGAAGTCTACAACCTCGGCGCACAGTCACACGTGAAGGTTTCGTTTGAGATGGCCGAGTA 243367 Query 24644 CACGGCCAACGTGGATGCTCTAGGCACCCTAAGAATTCTTGAAGCAATTCGCNNNNNNNN 24703 ||| | | |||| || | || || ||||| | | || || || || || Sbjct 243368 CACCGGCGACGTCGACGGCCTCGGTACCCTCCGTCTGCTCGACGCCATCCGTACCTGCGG 243427 Query 24704 NNNNNNNTTGAAATTCAGATTTTATCAGGCGGGTACGAGTGAGATGTTTGGCAAGGTGCA 24763 | | | | || || || || || |||| ||| || ||||| Sbjct 243428 CCTCGAGAAGCATGTGCGCTTCTACCAAGCCTCGACATCTGAGCTGTACGGAAAGGTTGT 243487 Query 24764 GGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCAAA 24823 |||||||| ||| ||||| || || || || ||||| ||||| || ||| | || Sbjct 243488 CGAGACGCCGCAGAGCGAGACGACGCCCTTCTACCCGCGCTCGCCGTACGGTGTCGCGAA 243547 Query 24824 GGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGCAA 24883 | ||| |||||||||||| || |||||||| ||||| | || || || || ||||| Sbjct 243548 GCTGTACGCGTACTGGATCACGGTCAACTACCGCGAGGCGTACGGCATGTACGCGTGCAA 243607 Query 24884 CGGAATTCTGTTCAACCATGAGTCGGAGCGTCGGGGACCTGAATTTGTTACACGAAAGAT 24943 ||| || || |||||||| |||||| ||| || || | || || || || || || Sbjct 243608 CGGCATCCTCTTCAACCACGAGTCGCCGCGGCGCGGCCGCACGTTCGTCACCCGCAAAAT 243667 Query 24944 TACTC---TTGGTATTGACCATTGGATCAAGACAAGGGCACCTAT-TG-AGCTGGGAAAC 24998 | | | ||| || | || | |||| ||| | || | || || ||| Sbjct 243668 CTCGCGCGCCGCCGCCGACATTTCGCTC--GGCAAGCAGTCCTGTCTGTACCTCGGCAAC 243725 Query 24999 CTAGATGCCAAACGTGATTGGGGGCATGCAGCCGACTACGTCGACGCCATGTGGCGCATG 25058 || || || || || || ||||| || || ||||||||| || | |||||||| |||| Sbjct 243726 CTCGACGCGAAGCGCGACTGGGGCCACGCGCGCGACTACGTTGAGGGCATGTGGCTCATG 243785 Query 25059 CTCCAACAGAATAAGCCAGAGGATTTTGTGATCGGCACCGGTCAGACGCA 25108 ||||| ||| ||||| || || |||||| ||| || || |||| || Sbjct 243786 CTCCAGCAGCCGAAGCCCGAAGACTTTGTGCTCGCGACGGGCGAGACACA 243835 >seq1 Length=2640167 Score = 82.4 bits (90), Expect = 9e-11 Identities = 153/224 (68%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 64627 CTGTTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGG 64686 |||||| || || ||||| | ||| ||| || ||||| || |||||| |||| Sbjct 596764 CTGTTCGACGCCATCGAGACCATCCCCTGCATTAAGAAGAAGGCCGATTGGGCCCTCCGC 596705 Query 64687 TGGATGAATCGTGGG---TCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAA 64743 ||||| | | || || || | | |||| || | || || ||| || || Sbjct 596704 TGGATCTCTGACAAGAAATCTTCCTTCGCTGAGCGCCTTGTCGCGTTCGCCGCCGTCGAG 596645 Query 64744 GGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATG 64803 || || ||||| ||||| || ||| || || |||||||| || ||||| || || ||| Sbjct 596644 GGTATCTTCTTCTCTGGTTCCTTCGCGTCCATCTTCTGGCTCAAGAAGCGTGGACTCATG 596585 Query 64804 CCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGG 64847 || ||||| | || ||||||||||| ||| |||||||||| Sbjct 596584 CCCGGTCTCACCTTCTCGAACGAGCTCATCAGCAGGGACGAGGG 596541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309159574880