Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phanerochaete_20chrysosporium_20[genbank_20GCA_5F001910725.1_202016- 12-20] 174 sequences; 39,205,125 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq120 114 8e-21 seq98 109 3e-19 >seq120 Length=2004100 Score = 114 bits (126), Expect = 8e-21 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | || || ||||||||||| || ||||| || || || || || ||| Sbjct 1878657 AGACGAAGCACGAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGC 1878716 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || ||||| || ||||| || || | |||||| ||||| ||||| | || ||| Sbjct 1878717 CCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCTTCC 1878776 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| |||| || ||| | || ||||| ||| || || | ||| Sbjct 1878777 TTGTCTTGGATC-TTTGCCTTGACGTTGTCGATCGTGTCGGAAGACTCAACCTCGAGGGT 1878835 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || ||||| | ||| || ||||| || |||||| Sbjct 1878836 AATCGTCTTGCCGGTGAGCGTCTTGACAAAGATTTGCATG 1878875 Score = 95.1 bits (104), Expect = 8e-15 Identities = 153/216 (71%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 34497 CACCAAA-TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTT 34555 |||||| ||||| ||| |||||| || ||||| ||||| || || || || | || | Sbjct 1879732 CACCAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCT 1879791 Query 34556 CAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTG 34615 |||| || || |||||||| || | |||||| ||||| || || | ||||||||||| Sbjct 1879792 CAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGTGGAATGCCCTCCTTGTCCT 1879851 Query 34616 TGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTT 34674 |||| || | || ||| | || ||||| | ||| || || | ||| || || Sbjct 1879852 GGATC-TTGGCCTTGACGTTGTCGATAGTGTCAGAGGACTCGACCTCGAGGGTGATGGTC 1879910 Query 34675 TTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || || | || ||||| || ||||||||| || Sbjct 1879911 TTGCCCGTGAGAGTCTTCACGAATATCTGCATGCTG 1879946 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/193 (71%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| |||||||| || || ||||| || || |||| || || || ||||| ||||| Sbjct 1878966 CTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGACCGTCCTCCAGCTGCTTACCAGCAAA 1879025 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | ||||| ||||| || || | |||||||||||| |||| || | || ||| Sbjct 1879026 -ATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATC-TTCGCCTTGACGT 1879083 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| || || ||| || || | || ||||| || ||||| | ||| |||| Sbjct 1879084 TGTCAATGGTATCCGAAGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGCGTCTTCA 1879143 Query 34694 CAAAAATCTGCAT 34706 | || || ||||| Sbjct 1879144 CGAAGATTTGCAT 1879156 >seq98 Length=2497588 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||| | |||||| ||| |||||| || |||||||| |||||||| || ||| Sbjct 2388701 AGGCGAAGCACGAGATGGAGCGTGGACTCCTTCTGGATGTTATAGTCTGAAAGGGTACGC 2388642 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || |||||||| || || ||||| || || ||||| ||||| || || | |||||| Sbjct 2388641 CCATCCTCAAGTTGCTTCCCCGCAAAGATCAACCGCTGCTGGTCTGGGGGAATACCCTCC 2388582 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | || || || |||||| |||| || Sbjct 2388581 TTGTCCTGGATC-TTCGCCTTGACATTGTCGATCGTATCAGAAGACTCCACCTCCAGAGT 2388523 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || ||||| ||||| ||||| ||||| Sbjct 2388522 GATGGTCTTTCCCGTCAACGTCTTCACGAAAATTTGCAT 2388484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728932576542