Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phanerochaete_20chrysosporium_20[genbank_20GCA_5F001910725.1_202016- 12-20] 174 sequences; 39,205,125 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq120 107 1e-18 seq98 100 2e-16 >seq120 Length=2004100 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || |||||||| || || ||||| ||||| || || ||| | Sbjct 1879942 ATGCAGATATTCGTGAAGACTCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 1879883 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || || || ||||| || || | || ||||| || Sbjct 1879882 GACACTATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCACCAGACCAG 1879823 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || || || || | ||||| | |||||||||| Sbjct 1879822 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGATTACAAC 1879763 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 1879762 ATCCAGAAGGAGTCCAC 1879746 Score = 102 bits (112), Expect = 6e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||| || || || || || || Sbjct 1879384 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATCACCCTTGAGGTCGAGTCGTCG 1879325 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| ||||| || || | || |||||||| Sbjct 1879324 GACACAATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCAGATCAG 1879265 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCA--CTTTAGGCGATTACA 23788 ||||| | || || |||||||| || || ||||| | |||| |||| | ||||||| Sbjct 1879264 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACGCTTTCG--GATTACA 1879207 Query 23789 ACATACAAAAAGAGTCCAC 23807 | || || || ||||| || Sbjct 1879206 ATATTCAGAAGGAGTCTAC 1879188 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| ||||| || || ||||| ||||| || || || | Sbjct 1879662 ATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACCATCACGCTCGAGGTCGAATCTTCC 1879603 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| ||||| | || || || || Sbjct 1879602 GACACCATTGATAATGTGAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCTCCGGACCA 1879544 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||| || || || |||| || || || ||||||||| Sbjct 1879543 GCAGCGTCTCATTTTTGCTGGCAAGCAGCTCGAGGACGGCCGTACGTTGTCCGATTACAA 1879484 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 1879483 CATTCAGAAGGAATCCAC 1879466 >seq98 Length=2497588 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||||||||||| || |||||||| || ||||| || || | Sbjct 2387746 AATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTTGAAGTCGAGTCATC 2387805 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| | | || || || ||||| ||||| | || ||||| || Sbjct 2387806 GGACACCATTGACAACGTGAAGGCGAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 2387865 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| || | || || || ||||| || || || || | |||||| | ||| || || Sbjct 2387866 ACAACGCCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACTCTCTCCGACTATAA 2387925 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 2387926 CATCCAGAAGGAGTCTAC 2387943 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || || || ||||| | || || || || || Sbjct 2388028 ATGCAGATCTTTGTCAAGACACTTACCGGCAAGACCATCACCTTGGAGGTCGAGTCGTCG 2388087 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || || || || || || || | |||||||||||| Sbjct 2388088 GATACGATTGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCGCCAGATCAA 2388147 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || | || || || ||||| || |||| |||| |||||| || ||| |||||| Sbjct 2388148 CAACGCCTCATCTTCGCTGGCAAGCAGTTGGAGGACGGACGCACCCTATCCGACTACAAC 2388207 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || |||||||| | ||| | ||| Sbjct 2388208 ATCCAGAAGGAGTCCACGCTTCATCTCGTT 2388237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008883208392