Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phanerochaete_20chrysosporium_20[genbank_20GCA_5F001910725.1_202016- 12-20] 174 sequences; 39,205,125 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq120 156 1e-32 seq98 152 1e-31 seq79 86.0 1e-11 >seq120 Length=2004100 Score = 156 bits (172), Expect = 1e-32 Identities = 145/184 (79%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 ||||||||||||||||| || || | |||||||||| ||| || | || || || ||| Sbjct 1879457 AGGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCGGACAACGTACGGCCGTCCTCGAGC 1879516 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| ||||| || || || || || ||||| || ||||| ||||||||||| |||||| Sbjct 1879517 TGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATC 1879576 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||||||| || |||||||| || | ||| || || | |||||| ||||||||| Sbjct 1879577 TTGGCCTTCACATTATCAATGGTGTCGGAAGATTCGACCTCGAGCGTGATGGTCTTGCCC 1879636 Query 225688 GTCA 225691 |||| Sbjct 1879637 GTCA 1879640 Score = 136 bits (150), Expect = 9e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 |||||||||| ||||| || || |||| |||||||||| | || | ||||| || | Sbjct 1879735 CAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCAA 1879794 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||||||| || || ||||| || || || ||||| || ||||| || |||||||| |||| Sbjct 1879795 GCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGTGGAATGCCCTCCTTGTCCTGGA 1879854 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| ||| || ||||| ||||| |||| || || || | ||||| ||||||| Sbjct 1879855 TCTTGGCCTTGACGTTGTCGATAGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGC 1879914 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||| | ||| || | ||| | ||||| Sbjct 1879915 CCGTGAGAGTCTTCACGAATATCTGCAT 1879942 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||||||||| || || || || || | ||||||||| | | || | |||||| Sbjct 1879173 AGGACAAGGTGGAGGGTAGACTCCTTCTGAATATTGTAATCCGAAAGCGTGCGGCCATCT 1879232 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || ||||| || |||||||| Sbjct 1879233 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCTGGAGGAATGCCCTCCTTGTCC 1879292 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || ||||| ||||| || | || || || | ||||||||| Sbjct 1879293 TGAATCTTGGCCTTGACGTTGTCGATTGTGTCCGACGACTCGACCTCAAGGGTGATCGTC 1879352 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| | || || | ||| | ||||| Sbjct 1879353 TTACCCGTGAGGGTCTTGACGAAGATCTGCAT 1879384 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || ||| || || |||| ||||| |||| | || | ||| || Sbjct 1878663 AGCACGAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGCCCGTCC 1878722 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| || || || ||||||||||| || |||||||||||| Sbjct 1878723 TCGAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCT 1878782 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| || ||||| ||||| || | || || || | || |||||| Sbjct 1878783 TGGATCTTTGCCTTGACGTTGTCGATCGTGTCGGAAGACTCAACCTCGAGGGTAATCGTC 1878842 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | || | |||||| Sbjct 1878843 TTGCCGGTGAGCGTCTTGACAAAGATTTGCAT 1878874 Score = 111 bits (122), Expect = 4e-19 Identities = 149/206 (72%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 ||||| || || || || || || | ||||| || | | ||| | || || || ||| Sbjct 1878952 AGGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGACCGTCCTCCAGC 1879011 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| ||||| || || || || || ||||| || ||||| || ||||||||||||||| Sbjct 1879012 TGCTTACCAGCAAA-ATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATC 1879070 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||| || || ||||| || || | || || || | ||||||||||||||| Sbjct 1879071 TTCGCCTTGACGTTGTCAATGGTATCCGAAGACTCGACCTCGAGCGTGATCGTCTTGCCG 1879130 Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713 |||| || || | ||| | |||||| Sbjct 1879131 GTCAGCGTCTTCACGAAGATTTGCAT 1879156 >seq98 Length=2497588 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 ||||||| ||||| || || || |||| || || |||| | ||| | ||||| || | Sbjct 2387954 CAAGGTGAAGAGTAGACTCCTTCTGGATGTTATAGTCGGAGAGAGTGCGGCCATCCTCGA 2387895 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||||||| || |||||||| || ||||||||||| || ||||| |||||||||||||||| Sbjct 2387894 GCTGCTTGCCCGCGAAGATGAGGCGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGGA 2387835 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| |||||| || |||||||| || | || || || | ||||||||||||| Sbjct 2387834 TCTTCGCCTTCACGTTGTCAATGGTGTCCGATGACTCGACTTCAAGGGTGATCGTCTTGC 2387775 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||| | || || | ||| | |||||| Sbjct 2387774 CCGTGAGGGTCTTGACGAAGATCTGCATT 2387746 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||||||||| || || || || |||| |||||||| | || || | || || Sbjct 2388467 AGGACAAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCCGACAGGGTGCGACCGTCC 2388408 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| | || ||||| || || || || || |||||||| Sbjct 2388407 TCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGTTGATCAGGTGGGATGCCCTCCTTGTCC 2388348 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || ||||| ||||| || | || || || | ||| || ||| Sbjct 2388347 TGAATCTTCGCCTTGACGTTGTCGATAGTGTCGGACGACTCGACCTCCAGCGTAATGGTC 2388288 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 2388287 TTGCCGGT 2388280 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || || ||||| || || |||| ||||| |||| | || | || || Sbjct 2388239 AGAACGAGATGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGATAGGGTGCGTCCGTCC 2388180 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| ||||||||||| || |||||||| || ||||| || || ||||| || Sbjct 2388179 TCCAACTGCTTGCCAGCGAAGATGAGGCGTTGTTGATCTGGCGGGATGCCCTCCTTATCC 2388120 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| || || || || || | || || || || ||||| ||| Sbjct 2388119 TGGATCTTCGCCTTCACGTTGTCAATCGTATCCGACGACTCGACCTCCAAGGTGATGGTC 2388060 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 2388059 TTGCCGGT 2388052 >seq79 Length=745021 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| ||||| || || |||| ||||| ||| || || | ||||| Sbjct 401242 AGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 401301 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 || |||||||| || |||||||| |||||||||||||| || || || Sbjct 401302 TCGAGCTGCTTGCCGGCGAAGATCAGTCGTTGTTGGTCTGGGGGGAT 401348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192528541400756