Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebia_20centrifuga_20[genbank_20GCA_5F001913855.1_202016-12-22] 3,019 sequences; 34,846,541 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1814 138 2e-27 >seq1814 Length=443622 Score = 138 bits (152), Expect = 2e-27 Identities = 294/437 (67%), Gaps = 3/437 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||| ||||| ||||| || | ||||| | ||||| || || ||||| Sbjct 436013 CAAGCAAAGTCGGTGTGCATGCCCTCGTCGCGGCTAATGAGCTCGTTCGAGAAGGTGAGA 435954 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| || ||||| || || ||||| || || ||||| || |||||||| || ||| Sbjct 435953 CCGGGCATCAGACCACGTTTCTTCAGCCAGAAGATCGACGCGAAAGATCCAGAGAAAAAG 435894 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC--TCCATAACCGGCACT-GTCATGT 42241 || || || || ||||||||||| | || | ||| | || | || ||| Sbjct 435893 ATACCCTCGACGGCCGCAAAGGCGACGAGACGCTCAGAGAAGGACGCGTTCTCGTCCGAA 435834 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| || | |||||||| |||||| | || || ||||| || || || ||||||| Sbjct 435833 ATCCATTTCAGCGCCCAATCAGCCTTCCTCTTGACGCAAGGGATAGTCTCGATGGCATCG 435774 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 ||||| || | | || || || | || || ||||| | || || | Sbjct 435773 AAGAGGTATTCACGCTGCTTCGGTTCCTTGATGTACGTGTCGATGAGGAGGGAGTATGTC 435714 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || || ||||| || || || || || || ||||| | | ||||||| | Sbjct 435713 TCGGAGTGGATGTTCTCCATCATGATTTGGAAGCCATAGAACGACCGCGCCTCGGCACAT 435654 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 || ||||| | | ||||||||| || || ||||| || || |||||| || ||| Sbjct 435653 TGGACTTCAGAGGAGAATCGTTCAAGCAAGTTCTCGTTAACGATACCGTCAGACGCAGCA 435594 Query 42482 AAAAACGCCAATACATG 42498 || || |||| ||||| Sbjct 435593 AAGAAGGCCAGAACATG 435577 Score = 127 bits (140), Expect = 3e-24 Identities = 370/564 (66%), Gaps = 12/564 (2%) Strand=Plus/Plus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 || ||| || || ||| ||||| || ||||| | ||| || | |||||||| || || Sbjct 433700 CATACACGCAAAGTCGGTGTGCATGCCTTCATCACGACTGATGAGCTCGTTGGAGAAGGT 433759 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAA 42180 | || ||||| || || ||||| || ||||||||||| |||||||| | ||||| || Sbjct 433760 TAAACCAGGCATGAGCCCGCGCTTCTTGAGCCAAAATATTGACGCAAAACACCCAGAGAA 433819 Query 42181 GAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG--GCACT---G 42235 ||| || ||||| |||||||| || || | | | ||| | ||| || | || | Sbjct 433820 GAATATGCCTTCGACTGCCGCGAACGCCACCAACCGCTCGC--TAAACGATGACCTCTCG 433877 Query 42236 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 || |||||| | ||||| || || |||||||| | || ||||| || || Sbjct 433878 TCCGAAATCCACCGCAGTGCCCAGTCTGCTTTCTTTTTGATGGCCGGAATCGTGTCGATA 433937 Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 ||| |||| | || | | | | ||||| | || || || |||| | || | Sbjct 433938 GCAGTAAACAAGTACTCCCGCTGGTGAGAGTCTTTGATGTAGGTGTCAATCAGTA-ACGA 433996 Query 42356 -TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTC 42414 ||| |||| || || ||||| || || | || || ||||| ||||||| || || Sbjct 433997 GTACGTTTCGGAGTGTATGTTCTCCATCATGACTTGGAAGCCGTAAAAACATCGAGCTTC 434056 Query 42415 GGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACT 42474 || ||||| || || | | || ||||| | | ||||| || || || ||||| Sbjct 434057 GGCCACCTGGACCTCATTGGAGAACCGTTCGACGAGGTTTTCATTTACAATACCGTCTGA 434116 Query 42475 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTT--- 42531 ||| || ||||| || | ||| ||| || || | |||| | ||| ||| Sbjct 434117 GGCGGCGAAAAAGGCTAGTACGTGTGAAATGAAGTGGCGTTCGCCATCGTTTAGTTTGTC 434176 Query 42532 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTC 42591 | |||||| || || | || || | ||| || ||||||| || || || || Sbjct 434177 GTGCCAATCTGAGAGGTCGTGGCTTAGGTCCATTTCCTCCGCCGTCCAGAAAGAAGCCTC 434236 Query 42592 TGCCTTTTTATACATATTCCAGAT 42615 |||||||| ||||| | |||||| Sbjct 434237 GGCCTTTTTGTACATTTGCCAGAT 434260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671113872884440