Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebia_20centrifuga_20[genbank_20GCA_5F001913855.1_202016-12-22] 3,019 sequences; 34,846,541 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq551 140 2e-28 seq552 104 2e-17 seq454 98.7 7e-16 seq1320 95.1 8e-15 seq221 82.4 5e-11 >seq551 Length=2049 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 678 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 619 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 618 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 584 >seq552 Length=11202 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 1833 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 1892 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 1893 GCCAATATTTAGCTTTA 1909 Score = 95.1 bits (104), Expect = 8e-15 Identities = 63/70 (90%), Gaps = 5/70 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 11133 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 11192 Query 25957 TAATCCTTTC 25966 |||||| ||| Sbjct 11193 TAATCCATTC 11202 >seq454 Length=96760 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 |||||| ||| |||||| || ||||||||||| |||| || | || || | || Sbjct 80498 ATGAAGGGTGGACTCCTTCTGGATATTGTAATCGGACAGCGTGCGACCATCCTCAAGCTG 80557 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 ||| || || || || || || |||||||||| |||| || || || ||| ||| || Sbjct 80558 TTTACCAGCGAAGATAAGACGCTGTTGATCGGGTGGGATACCCTCCTTATCCTGAATCTT 80617 Query 38234 TTGCTTCACATTCTGGACAGTATC--TCCACTTTCAACTTCTAATGTAATAGTTTTACCC 38291 ||||||||| | || || || | || || || || |||||||| || || ||| Sbjct 80618 CGCCTTCACATTGTCGATCGTGTCAGACGAC--TCGACCTCCAATGTAATCGTCTTGCCC 80675 Query 38292 GTCAAGGTTTTCACGAATATCTGCATG 38318 || | ||| || ||||| ||||||||| Sbjct 80676 GTGAGGGTCTTGACGAAGATCTGCATG 80702 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/211 (71%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 38109 ACCAA-ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||||| |||||| ||||| ||||| || ||||||||||| || | || | || || Sbjct 79757 ACCAAGATGAAGCGTGCTTTCCTTCTGGATATTGTAATCGGAAAGCGTCCGACCATCCTC 79816 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | ||| || || ||||| || | ||| |||||||| | || | ||||| || || Sbjct 79817 AAGTTGCTTGCCAGCAAAGATCAAGCGCTGTTGATCTGGAGGAATCCCTTCCTTATCTTG 79876 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAACTTCTAATGTAATAGTTT 38286 ||| || ||||||||| | | || || | || ||||| || |||||||| || | Sbjct 79877 AATCTTGGCCTTCACATTGTCAATGGTGTC-CGACGACTCAACCTCCAATGTAATGGTCT 79935 Query 38287 TACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || | || |||||||| |||||||| Sbjct 79936 TGCCAGTAAGAGTCTTCACGAAGATCTGCAT 79966 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 |||||||| |||||| ||||||||||| || |||| || | || || | || Sbjct 80271 TGAAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAGCGTGCGACCATCCTCAAGCTGC 80330 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || || || || || || || ||||| | || | ||| || || ||| ||| || Sbjct 80331 TTACCAGCGAAGATAAGACGCTGCTGATCTGGTGGAATGCCCTCCTTATCCTGAATCTTC 80390 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 |||||||| | || || || |||||| || |||||||| || || ||||| Sbjct 80391 GCTTTCACATTGTCGATCGTGTCGGACGATTCAACCTCCAATGTAATCGTCTTGCCCGTG 80450 Query 38295 AAGGTTTTCACGAATATCTGCATG 38318 | ||| || ||||| ||||||||| Sbjct 80451 AGGGTCTTGACGAAGATCTGCATG 80474 >seq1320 Length=6950 Score = 95.1 bits (104), Expect = 8e-15 Identities = 63/70 (90%), Gaps = 5/70 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1372 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1431 Query 25957 TAATCCTTTC 25966 |||||| ||| Sbjct 1432 TAATCCATTC 1441 >seq221 Length=41398 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||||||||||||||| || || ||||||||||| | || |||| || || || Sbjct 37068 TGAAGAGTGCTCTCCTTCTGGATGTTGTAATCAGAAAGGGTGCGACCGTCCTCCAACTGC 37127 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || ||||| || || ||||| || || || | || | || || |||||| ||| || Sbjct 37128 TTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTG 37187 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| || || | | || || || || || | ||| || || || || ||| Sbjct 37188 GCCTTGACGTTATCAATGGTGTCAGAGGACTCCACCTCAAGTGTGATGGTCTTGCCGGTC 37247 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 ||||| || ||||| |||||||| Sbjct 37248 AAGGTCTTGACGAAGATCTGCAT 37270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334934875931789