Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebia_20centrifuga_20[genbank_20GCA_5F001913855.1_202016-12-22] 3,019 sequences; 34,846,541 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq221 132 4e-26 seq454 109 5e-19 >seq221 Length=41398 Score = 132 bits (146), Expect = 4e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || ||||| || || |||| ||||| || || || | Sbjct 38111 ATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCT 38052 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || ||||||||||||||||||||||| ||||| ||| Sbjct 38051 GACACCATCGACAATGTCAAGGCTAAGATTCAAGACAAGGAGGGTATTCCTCCCGACCAA 37992 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || ||||| || | |||||| |||||| | |||||||||||| Sbjct 37991 CAGCGTTTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGCACTCTTTCCGATTACAAC 37932 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 37931 ATCCAGAAGGA 37921 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || ||||| || || |||| ||||| ||||| || | Sbjct 37270 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACACTTGAGGTGGAGTCCTCT 37211 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || ||||| ||||||||||||||||| || || || Sbjct 37210 GACACCATTGATAACGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAG 37151 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||||| ||||| |||||| | || ||||||||| Sbjct 37150 CAGCGCCTGATCTTCGCCGGCAAGCAGTTGGAGGACGGTCGCACCCTTTCTGATTACAAC 37091 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 37090 ATCCAGAAGGA 37080 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || ||||| || |||| ||||| ||||| || || Sbjct 37548 ATGCAGATCTTCGTCAAGACCTTGACTGGTAAGACCATCACCCTTGAGGTGGAGTCCTCC 37489 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || || |||||||||||||| ||||| || || ||| Sbjct 37488 GACACCATCGACAACGTTAAGGCGAAGATCCAAGACAAGGAGGGAATTCCTCCAGACCAA 37429 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || ||||| || ||| | |||||| || ||| | || || || ||| Sbjct 37428 CAACGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGTACCCTTTCTGACTATAAC 37369 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 37368 ATCCAGAAGGA 37358 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || || |||| ||||| || || || | Sbjct 37826 ATGCAGATTTTCGTCAAGACGCTCACGGGCAAGACTATCACCCTTGAGGTCGAGTCCTCT 37767 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| ||| || |||||||||||||| || || || || ||| Sbjct 37766 GACACCATCGACAATGTCAAGGCAAAGATCCAAGACAAGGAGGGCATCCCTCCAGACCAA 37707 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || ||||| || ||| | |||||| ||||| |||| || || ||| Sbjct 37706 CAACGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACACTCTCTGACTATAAC 37647 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 37646 ATCCAGAAGGA 37636 >seq454 Length=96760 Score = 109 bits (120), Expect = 5e-19 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| || ||||||||||| |||||||||||||| |||||||| || || || ||| Sbjct 80617 AAGATTCAGGATAAGGAGGGTATCCCACCCGATCAACAGCGTCTTATCTTCGCTGGTAAA 80558 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| ||||| | ||||||||||| || || || || |||||| | ||| Sbjct 80557 CAGCTTGAGGATGGTCGCACGCTGTCCGATTACAATATCCAGAAGGAGTCCACCCTTCAT 80498 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | ||||| || ||| |||| |||||||| || | | Sbjct 80194 ATGCAAATCTTCGTGAAGACTCTCACCGGCAAGACGATCACGCTTGAAGTCGAGTCATCT 80135 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || | || || ||||| |||||||| || ||||| || || || Sbjct 80134 GATACGATCGACAATGTAAAGGCGAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAG 80075 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| ||||| || | || || || || |||| ||||||||| Sbjct 80074 CAACGACTCATCTTTGCTGGCAAGCAACTTGAAGACGGTCGTACACTCTCGGATTACAAC 80015 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 80014 ATCCAGAAGGAGTCCAC 79998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419712556501735