Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebia_20centrifuga_20[genbank_20GCA_5F001913855.1_202016-12-22] 3,019 sequences; 34,846,541 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq616 141 1e-28 seq1814 123 3e-23 seq769 113 5e-20 >seq616 Length=116746 Score = 141 bits (156), Expect = 1e-28 Identities = 285/411 (69%), Gaps = 14/411 (3%) Strand=Plus/Minus Query 105194 GCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGAT 105253 |||||| ||||||||| | || || || |||||| ||||||| ||||| || || ||| Sbjct 86118 GCTCGTCGTTCTAATATGCGTCATCGCCCTATTGGTGTCGGTGTACAGGGCCTTGCAGAT 86059 Query 105254 GTATTCATT-CTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAA--TCAATGCG 105310 | ||||| ||||| | | ||||| |||| ||||||| ||| ||||| | Sbjct 86058 GCGTTCATGGCTTTGAAAATGC-CGTTTGAATCCGCAGAAGCGA--GAATGCTCAATAAG 86002 Query 105311 CGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTT 105370 | || || ||||| || || ||||| || | ||||| || ||| | || | || Sbjct 86001 CAGATCTTCGAGACGATCTACCACGCTGCATTGGAGGCCAGCAGCGAGATCGCTCAAGTG 85942 Query 105371 GATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGT-GCTTCAATTTGA 105429 |||||||||||||| || | |||||| || || || |||||| ||| || || || Sbjct 85941 GATGGTCCATATGAGACGTGGGAGGGTAGCCCGGCATC-CAAGGGACAGCTCCAGTTCGA 85883 Query 105430 TATGTGGGAAGGTGAGACCAA-GCTTCACTACGACTGGGAAGCTCTCAAGGAACGCAT-- 105486 | | |||| | ||| ||||| | || || |||||| | | |||||| || Sbjct 85882 TCTCTGGGGCG-TGACACCAACGGATCTCTGGGACTGGACTAGTTTGAAGGAAAAGATTG 85824 Query 105487 CAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGC 105546 | |||| | ||||| | ||| || ||| | ||||| ||||| || || || ||| Sbjct 85823 CCAGGACA--GGTCTGAGGAACTCCCTTCTCCTCGCTCCCATGCCTACGGCGTCTACCAG 85766 Query 105547 ACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 |||||||||||| ||||||||||| || |||||||| | |||||||| Sbjct 85765 TCAAATCTTGGGTTTCAATGAATGCTTCGAGCCCTACACCAGCAACATCTA 85715 >seq1814 Length=443622 Score = 123 bits (136), Expect = 3e-23 Identities = 177/244 (73%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 ||||| || |||||| | || | || || | | | ||| || |||||||| |||| Sbjct 435769 CTCTTCGATGCCATCGAGACTATCCCTTGCGTCAAGAGGAAGGCTGATTGGGCGCTGAAA 435828 Query 94774 TGG-TTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 94832 ||| ||| || | ||||| |||| ||||||| ||| |||| |||||| || || Sbjct 435829 TGGATTTCGGACGAGAACGCGT-CCTTCTCTGAGCGTCTCGTCGCCTTTGCGGCCGTCGA 435887 Query 94833 GGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCA 94891 ||||||||| |||||||| || ||| ||| | || | ||||| ||||| || ||||| | Sbjct 435888 GGGTATCTTTTTCTCTGGATCTTTC-GCGTCGATCTTCTGGCTGAAGAAACGTGGTCTGA 435946 Query 94892 TGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGT 94951 |||| |||||| |||||| |||||||| || || |||||||| | ||| || | Sbjct 435947 TGCCCGGTCTCACCTTCTCGAACGAGCTCATTAGCCGCGACGAGGGCATGCACACCGACT 436006 Query 94952 TTGC 94955 |||| Sbjct 436007 TTGC 436010 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGG 94886 || || || || ||||||||||| | || |||| | || | ||||||||||||||| || Sbjct 433834 GTCGAAGGCATATTCTTCTCTGGGTGTTT-TGCGTCAATATTTTGGCTCAAGAAGCGCGG 433776 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCA 94946 |||||||| ||| | ||||||||||||||| ||| |||||| || || | ||| Sbjct 433775 GCTCATGCCTGGTTTAACCTTCTCCAACGAGCTCATCAGTCGTGATGAAGGCATGCACAC 433716 Query 94947 AGAGTTTGCG 94956 || |||||| Sbjct 433715 CGACTTTGCG 433706 >seq769 Length=68272 Score = 113 bits (124), Expect = 5e-20 Identities = 274/410 (67%), Gaps = 9/410 (2%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || || || ||||| || || | || ||| ||| || | ||| ||||||| || | Sbjct 1928 CGGTCGAAACGACCGGGGCGCATCAGAGCGGGATCGAGAACGTCAGCGCGATTGGTGCCA 1987 Query 9584 GCGATGACAACAATACCTGTT--TCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641 |||| || |||| | || | | | | || ||||||||||| | || |||| Sbjct 1988 GCGAGAACCACAA--CGTGCTCTTGGGTGCCGAAGCCATCCATCTCCACAAGGAGCTGGT 2045 Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGC---ACTGCGTTGCTTTC 9698 | | ||| | || |||||||| || || || ||||| || ||| ||| | Sbjct 2046 TCAAAGTGTTCTCGCGTTCATCGTTAGCACCGATTCCACCTTTTCGACCGCGAGCCTTGC 2105 Query 9699 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCA 9757 | | ||| || || ||||| | ||| || |||||||| || ||| | || | || Sbjct 2106 CGATGGCGTCGATTTCATCGACGAAAACAATGCATGGGGCGTTCTTCTTGGCCGTCG-CA 2164 Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817 ||||| ||||||||||| | || ||||| |||||||| ||||| || | || | || Sbjct 2165 AAGAGGTCCCGTACACGAGACGAACCAACACCGACAAACATTTCCACGAACTCTGAGCCG 2224 Query 9818 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877 ||| || ||| || || || | ||| || ||| ||||| |||||| | ||| || Sbjct 2225 GAAACCGAGAAGAATGGTACGTTGGCTTCTCCTGCAGTGGCTTTGGCGAGCAAAGTTTTT 2284 Query 9878 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 |||||||| || ||| | |||| || ||||| || |||||||| || Sbjct 2285 CCCGTACCGGGAGGACCTGAAAGGATTGCGCCTCGAGGGATCTTGGCACC 2334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583238789195560