Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurotus_20ostreatus_20[genbank_20GCA_5F001956935.1_202017-01-19] 2,529 sequences; 35,820,573 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2481 107 1e-17 seq190 91.5 1e-12 >seq2481 Length=1366164 Score = 107 bits (118), Expect = 1e-17 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || |||||||| ||||| || || ||| || || | || ||||||| ||||| Sbjct 516607 CGGAGACGGAGAACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCAGAAAGAGTG 516666 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | |||||| |||||||| || || || ||||| || |||||||| |||||||||||| Sbjct 516667 CGGCCATCTTCGAGTTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCGGGAGGAATTCCT 516726 Query 480672 TCCTTGTCTTGAATCTT 480688 |||||||| |||||||| Sbjct 516727 TCCTTGTCCTGAATCTT 516743 Score = 105 bits (116), Expect = 4e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || |||||||| ||| ||| || || ||||| || | | || Sbjct 516378 ACGCAGACGAAGGACGAGATGAAGAGTAGATTCCTTCTGAATGTTATAGTCCGACAATGT 516437 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || | ||||||||||| ||||| | ||||||||| ||||| |||||||| Sbjct 516438 GCGACCATCCTCCAACTGCTTTCCAGCGAAAATCAAACGTTGTTGGTCAGGTGGAATTCC 516497 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||||||| |||||| || || || || || || | | | || || | Sbjct 516498 TTCCTTGTCTTGGATCTTTGCCTTAACGTTGTCGATTGTGTCGGAAGACTCAA-CCTCGA 516556 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| ||||| || |||||||| ||||| || || || || Sbjct 516557 GGGTGATAGTCTTTCCGGTGAGGGTCTTGACAAAGATCTG 516596 >seq190 Length=61660 Score = 91.5 bits (100), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||||||||| |||||||| || || || || || ||| || |||| ||||| Sbjct 9952 CGAAGACGGAGGACAAGATGGAGCGTCGACTCCTTCTGAATATTGTAGTCAGAAAGAGTA 10011 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||| || ||||| || || || || || ||||| || || | ||||| || || Sbjct 10012 CGGCCATCCTCGAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTTGGGAGGGATACCC 10071 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 |||||||| |||||||| |||||| || || || || | | | ||| || Sbjct 10072 TCCTTGTCCTGAATCTTCGCCTTGACATTATCGATGGTGTCCGAGGACTCAACTTCGAGA 10131 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| ||||| ||||| || || Sbjct 10132 GTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTG 10169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268070718919292