Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurotus_20ostreatus_20[genbank_20GCA_5F001956935.1_202017-01-19] 2,529 sequences; 35,820,573 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2467 109 3e-19 seq2481 96.9 2e-15 seq2407 96.9 2e-15 seq2476 93.3 3e-14 seq190 86.0 4e-12 >seq2467 Length=211848 Score = 109 bits (120), Expect = 3e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||||| || | |||||| || |||||| || ||||| || || || Sbjct 155868 CCGCCGCGAAGACGCAAGACAAGATGGAGCGTTGACTCCTTCTGGATGTTGTAGTCCGAG 155809 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || |||||||| || | |||||||| || || || Sbjct 155808 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGTTGATCGGGAGGG 155749 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | || ||||| | ||| || Sbjct 155748 ATGCCCTCCTTGTCCTGGATC-TTCGCCTTTACGTTGTCGATCGTGTCGGAGGACTCGAC 155690 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 |||| ||| || || || || || | ||| ||||| || ||||||||| || Sbjct 155689 CTCCAGGGTGATGGTCTTGCCAGTAAGCGTCTTCACGAAGATCTGCATGCTG 155638 >seq2481 Length=1366164 Score = 96.9 bits (106), Expect = 2e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | ||| ||||| ||||| ||||||||||| || || | ||| || Sbjct 516382 AGACGAAGGACGAGATGAAGAGTAGATTCCTTCTGAATGTTATAGTCCGACAATGTGCGA 516441 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || || || || || || ||||| |||||||| || || | ||| ||| Sbjct 516442 CCATCCTCCAACTGCTTTCCAGCGAAAATCAAACGTTGTTGGTCAGGTGGAATTCCTTCC 516501 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| |||| |||||| | |||||||| ||| || || | ||| Sbjct 516502 TTGTCTTGGATC-TTTGCCTTAACGTTGTCGATTGTGTCGGAAGACTCAACCTCGAGGGT 516560 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || ||||| | || || ||||| ||||||||| Sbjct 516561 GATAGTCTTTCCGGTGAGGGTCTTGACAAAGATCTGCATG 516600 >seq2407 Length=893 Score = 96.9 bits (106), Expect = 2e-15 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| || || | |||||| | |||||| |||||||| || || ||| Sbjct 174 CCGCCGCGAAGACGTAAGACAAGATGGAGCATCAACTCCTTCTGAATGTTTTAGTCAGAA 115 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| ||||| || ||||| || || | |||||||||||| || || Sbjct 114 AGAGTGCGCCCATCTTCGAGTTGCTTGCCGGCGAAGATGAGACGCTGTTGGTCGGGAGGG 55 Query 34600 ACTCCCTCCT--TGTCTGTGATCTT 34622 | ||||||| |||| |||||| Sbjct 54 ATGCCCTCCTAATGTCCTGGATCTT 30 >seq2476 Length=877278 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||||| || | ||||| || |||||| || ||||| || || ||| Sbjct 851248 CCGCCGCGAAGACGCAGGACAAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCAGAA 851189 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || ||||| || ||||| || || | ||||||||||| || || Sbjct 851188 AGAGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCGGGAGGG 851129 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCT--CTCC 34656 | ||||||||||| ||| || | || ||| || || ||||| || | || Sbjct 851128 ATGCCCTCCTTGTC-CTGAATCTTCGCCTTGACGTTATCGATGGTGTC--CGATGATTCG 851072 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || | ||| || || || || || | ||| || || || ||||||||| Sbjct 851071 ACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTAACGAAGATCTGCATG 851021 >seq190 Length=61660 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | |||||| || |||||| ||||| || || || ||| Sbjct 9946 CCACCGCGAAGACGGAGGACAAGATGGAGCGTCGACTCCTTCTGAATATTGTAGTCAGAA 10005 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || |||||||| ||||| || || | |||||| |||| || || Sbjct 10006 AGAGTACGGCCATCCTCGAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGGTTGGGAGGG 10065 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||| || | || || || || ||||| | ||| || Sbjct 10066 ATACCCTCCTTGTC-CTGAATCTTCGCCTTGACATTATCGATGGTGTCCGAGGACTCAAC 10124 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||| | || || || || || || | || ||||| || ||||||||| Sbjct 10125 TTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 10173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314719899345257