Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurotus_20salmoneostramineus_20[genbank_20GCA_5F001742905.1_202016 -08-09] 26,934 sequences; 65,897,893 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1431 114 1e-20 seq9456 105 7e-18 seq804 104 3e-17 >seq1431 Length=25833 Score = 114 bits (126), Expect = 1e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 ||||| |||| ||| | || || || |||||||| |||||||||||||| || ||| Sbjct 4077 TTTGCTGAACGCCTCGTCGCCTTCGCCGCAGTGGAAGGCATCTTCTTCTCTGGATCCTTC 4018 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || |||||||| || |||||||| |||||||| || || | |||||||| ||| Sbjct 4017 GCAGCCATCTTCTGGCTGAAGAAGCGTGGACTCATGCCAGGGCTTACCTTCTCCAATGAG 3958 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 ||||| ||| ||||||||| | || ||| ||||| Sbjct 3957 CTGATCAGCCGTGACGAGGGCATGCACACGGACTTTGC 3920 Score = 102 bits (112), Expect = 9e-17 Identities = 139/192 (72%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 59925 AAACAAAAAGCAGAATGGGCCATGCAGTGGATG--AGTCCTGGAG-CATCATTTGCACAA 59981 ||| |||| ||||| |||||||| | ||||| || | | | |||| |||| | || Sbjct 5990 AAAGAAAAGGCAGACTGGGCCATCCGCTGGATAGAAGATCGGCATTCATCCTTTGGAGAA 6049 Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 || ||| | || || || ||| ||||| || ||||||||||| || ||| || || Sbjct 6050 CGGCTCGTCGCATTCGCGGTCGTTGAAGGTATATTCTTCTCTGGATCATTCGCGGCCATC 6109 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 ||||||||||| ||||| || |||||||| || || | || || ||||| || || | Sbjct 6110 TTCTGGCTCAAGAAGCGCGGGCTCATGCCTGGTCTTACCTTTTCAAACGAACTTATCAGC 6169 Query 60102 CGGGACGAGGGC 60113 || || |||||| Sbjct 6170 CGAGATGAGGGC 6181 >seq9456 Length=2706 Score = 105 bits (116), Expect = 7e-18 Identities = 201/295 (68%), Gaps = 6/295 (2%) Strand=Plus/Plus Query 78864 CATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCT 78923 ||||||| ||||||| || || || || |||||| | || || ||||| |||||||| Sbjct 1704 CATGAAGGCATCGGCAAGACCTTGCACACCGATACCAATGGGACGGTGACGCATGTT--- 1760 Query 78924 CTTTCGGGCCGCCTCGGTCG---GGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACG 78980 | |||| || || | || |||| |||| ||||||| ||||| ||||| Sbjct 1761 CGATCGGCGAGCTTCAGGCGTAGGGTAGTAGTTGACGTCGATGATACGGTTGAGGTTGAA 1820 Query 78981 CGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCTTTGATGAA 79040 | ||||||| || || || | | ||| ||| | | | |||| |||||| Sbjct 1821 GGCGACGACCTTGGTGACGTCATGGAGTTTCTGGAAGTTGTATTTGCCACCTTGGATGAA 1880 Query 79041 AGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTC 79100 | || || | ||| |||| ||| || ||||| ||||| || || || || Sbjct 1881 CGATGGAAGAGCGACCGAGGCCAAGTTACAAACGGCAGTCTCATCGGGAGACGAGTATTC 1940 Query 79101 GATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTG 79155 |||||| |||||||| | || || ||||| |||||||||| ||||||||||||| Sbjct 1941 GATGATCTCTGTGCAGAGGTTGGAAGACTTAATGGTGCCGAGGTTCTTCTGGTTG 1995 >seq804 Length=7234 Score = 104 bits (114), Expect = 3e-17 Identities = 203/296 (69%), Gaps = 8/296 (3%) Strand=Plus/Plus Query 78864 CATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCT 78923 ||||||| ||||||| || || || || |||||| | || || ||||| |||||||| Sbjct 6229 CATGAAGGCATCGGCAAGACCTTGCACACCGATACCAATGGGACGGTGACGCATGTT--- 6285 Query 78924 CTTTCGGGCCGCCTCGGTCG---GGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACG 78980 | |||| || || | || |||| |||| ||||||| ||||| ||||| Sbjct 6286 CGATCGGCGAGCTTCAGGCGTAGGGTAGTAGTTGACGTCGATGATACGGTTGAGGTTGAA 6345 Query 78981 CGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCTTTGATGAA 79040 | ||| ||| || || || | | || ||| | | | |||| |||||| Sbjct 6346 GGCGACAACCTTGGTGACGTCATGGAGCTTCTGGAAGTTGTACTTGCCGCCTTGGATGAA 6405 Query 79041 AGTCGGTAG-GCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCT 79099 | ||| || ||| | |||||||| ||| || || || ||||| || || || | Sbjct 6406 GGACGGGAGAGCA-ACCGATGCCAAGTTACAAACTGCAGTCTCATCGGGAGACGAGTATT 6464 Query 79100 CGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTG 79155 ||||||| |||||||| | || || ||||| |||||||||| ||||||||||||| Sbjct 6465 CGATGATCTCTGTGCAGAGGTTGGAAGACTTAATGGTGCCGAGGTTCTTCTGGTTG 6520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548340125412960