Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq51 109 1e-18 >seq51 Length=3165537 Score = 109 bits (120), Expect = 1e-18 Identities = 135/180 (75%), Gaps = 10/180 (6%) Strand=Plus/Minus Query 230435 TTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTA 230493 ||||||| ||| || || ||||||||| | | || ||| | ||||||||||| ||||| Sbjct 1579379 TTCCATG-CGCGCTCATCGGCATGAACTCCAAGCTCATGTGCCAGTACATCGAGTTCGTC 1579321 Query 230494 GCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAAC----TCTAAGAACCC 230549 |||||||| | | ||||| || ||| ||||||| |||| || || | |||||| Sbjct 1579320 GCCGACCGTCTACTCGTTGCCCTCGGTGACGAGAA---GTACTACGGCGTC-ACGAACCC 1579265 Query 230550 CTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGT 230609 ||| | || ||||| | || ||||| || || ||||| ||||||||||| ||||| || Sbjct 1579264 CTTCGACTTCATGGACATGATCTCGCTCCAGGGCAAGACGAACTTCTTCGAGAAGCGCGT 1579205 Score = 98.7 bits (108), Expect = 2e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || ||||||||||| | | ||| | || |||||||| ||||| |||||||| | Sbjct 1582094 CTCATAGGCATGAACGCCCAGTTGATGTGTCAATACATCGAGTTCGTGGCCGACCGACTG 1582153 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | || || ||||| | || || |||||| | | |||||| || | || ||||| Sbjct 1582154 CTGGTCGCGCTTGGAAATGACAAGCACTACAACGCGACGAACCCGTTCGACTTCATGGAC 1582213 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGT 230609 | || ||||| ||||| ||||| ||||||||||| ||||| || Sbjct 1582214 ATGATATCGCTGCAAGGCAAGACGAACTTCTTCGAGAAGCGCGT 1582257 Score = 84.2 bits (92), Expect = 5e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 ||||| |||||||| | ||| || ||| | |||||||| ||||| | ||| | |||||| Sbjct 1580109 TTCCCCATCCAATACCACGAAATCTGGCAGATGTACAAAAAGGCTGAGGCCTCCTTCTGG 1580050 Query 229819 ACCACTGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATGAC 229878 || | ||||| | |||| | ||| || ||||||| | ||||| ||| Sbjct 1580049 ACGGCGGAGGAGATGGATCTGTCCAAGGACCTCCACGACTGGAACAACCGCCTCAACGAC 1579990 Query 229879 GACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 229937 || || ||||| |||||| ||| |||| | || ||||| | ||||||||||| || Sbjct 1579989 GATGAGCGTCACTTCATCTCCCACGTCCTCGCCTTCTTCGCTGCGTCCGATGGTATCGT 1579931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057822129634940