Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq51 143 3e-29 >seq51 Length=3165537 Score = 143 bits (158), Expect = 3e-29 Identities = 368/557 (66%), Gaps = 4/557 (1%) Strand=Plus/Plus Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 |||||||| | ||| || ||||| || || || | |||| ||| || || ||| Sbjct 1579554 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGACCGG-CATGAGGCCACGCTTC 1579612 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 || | ||| || || | ||||||||| || || ||||| ||||||||||||| ||||| Sbjct 1579613 TTCAGCCAGAAGATGGAGGCGAACGAGCCCGAGAAGAAGATACCCTCGACGGCGGCAAAG 1579672 Query 17105 GCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCG 17164 |||| | || || || | | | || |||| | ||||| | |||| ||| Sbjct 1579673 GCGACGAGACGCTCCGCAAAGGCAACCTCCTTGTCGCTGATCCAACGAAGAGCCCAGTCG 1579732 Query 17165 GCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGT 17224 || || | ||| |||||| ||||| || ||||| | || | | || | ||| Sbjct 1579733 GCCTTCTTCTTGATGCAAGGGATCGTGTCAATGGCATCGAAGAGGTATTCGCGCTGCTGA 1579792 Query 17225 AGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATG 17284 |||| | || || || |||||||| ||| ||| | |||||||| ||||||||||| Sbjct 1579793 GGGTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCGGAGTGAATGTTCTCCATC 1579852 Query 17285 GCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGT 17344 || || || ||||| ||||| || || ||||| || || || | |||| || Sbjct 1579853 ATGATTTGGAAACCGTAGAAGCAGCGTGCCTCCGCGGCCTGGACCTCGTTGGAGAAACGC 1579912 Query 17345 TCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTA 17404 || | || || ||||| ||||| || ||| ||| ||||| || || | | || Sbjct 1579913 TCGACGAGGTTCTCGTTGACGATACCATCGGACGCAGCGAAGAAGGCGAGGACGTGGGAG 1579972 Query 17405 ATGAAATATTTTTCGTC--CGGTG-TAAGAACGCGCCAGTCCTTTAAATCTTTGGATATA 17461 ||||| | || || || || | | |||||| | | || ||||| | | Sbjct 1579973 ATGAAGTGACGCTCATCGTCGTTGAGGCGGTTGTTCCAGTCGTGGAGGTCCTTGGACAGA 1580032 Query 17462 TCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCA 17521 |||| || || | ||||| || ||| | |||||||| ||||| | ||| || || Sbjct 1580033 TCCATCTCCTCCGCCGTCCAGAAGGAGGCCTCAGCCTTTTTGTACATCTGCCAGATTTCG 1580092 Query 17522 TTGTATTGTATGGGGAA 17538 | |||||| |||||||| Sbjct 1580093 TGGTATTGGATGGGGAA 1580109 Score = 114 bits (126), Expect = 1e-20 Identities = 288/436 (66%), Gaps = 10/436 (2%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 ||||| ||||| || || | |||||||| | |||||| || ||||| |||||||| Sbjct 1581924 AGACAGGCGAAGTCAGTGTGCATCCCCTCGTCGCGGCTGATGAGCTCGTTCGAAAATGTG 1581865 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | |||||||| || || ||||| | ||| || || | |||||| || ||||| ||| Sbjct 1581864 AGGCCGGGCATTAGCCCGCGCTTCTTGATCCAGAAGATGGAGGCGAATGAACCAGAGAAG 1581805 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || ||||||||||||| || || || | | || || ||| || | | | || | Sbjct 1581804 AAGATACCCTCGACGGCGGCGAAGGCAACGAGCCGCTCAGCGAACACTGAGCGCTCGTCA 1581745 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200 ||||| | |||| || || || | ||| ||||| || || || ||||| Sbjct 1581744 GATATCCAGCGGAGTGCCCAGTCTGCCTTCTTCTTGATGCATGGGATGGTCTCGATGGCG 1581685 Query 17201 TTAAA----TAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAGGC 17255 | || | | | || | | || || | || || || || ||||| ||| Sbjct 1581684 TCGAAGAGGAAGGTACGCT-----CGGCGGGATCCTTGATGTAGGTGTCAATGAGGAGGG 1581630 Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315 || | || ||||| | ||| || || ||||||||| ||||| ||||| ||||| | Sbjct 1581629 AATAGGTCTCAGAGTGCACGTTTTCGATCATTATCTGAAAGCCGTAGAAGCAGCGGGCCT 1581570 Query 17316 CCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGC 17375 |||| || ||||| |||| || || | || || ||||||||||| ||||| Sbjct 1581569 CCGCGGCCTGGACTTCATTCGAGAACCGCTCGACAAGGTTCTCGTTCACGATACCGTCTG 1581510 Query 17376 TCGCGGCGAAAAACGC 17391 |||||||| || || Sbjct 1581509 AGGCGGCGAAGAAGGC 1581494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517544707233840