Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2 125 8e-24 >seq2 Length=1429897 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || | ||||| || |||| || |||||||| |||||||| Sbjct 256688 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAA 256629 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | ||| | || |||||||||| ||| || ||||| ||| Sbjct 256628 GATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTGA-CGT 256570 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || || || || || |||| ||||| || ||||| || || ||||| | Sbjct 256569 TGTCAATGGTATCCGAGGACTCGACCTCGAGGGTGATCGTCTTGCCAGTCAGAGTCTTGA 256510 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 256509 CAAAGATCTGCAT 256497 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || | ||| || || | || || || |||||||| || || Sbjct 256969 CTCCTTCTGAATGTTGTAGTCGGACAGCGTGCGGCCATCCTCCAGTTGCTTACCCGCAAA 256910 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | ||||||||||| | || | | |||||| ||| ||| | |||| |||| || Sbjct 256909 GATCAACCGCTGCTGGTCCGGGGGAATACCCTCCTTATCC-TGAATCTTTGCCTTGA-CG 256852 Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | | ||||| || ||||| |||| ||||| || ||||| || || ||||| Sbjct 256851 TTGTCGATGGTGTCCGAAGACTCCACCTCGAGAGTGATCGTCTTGCCGGTCAGAGTCTTG 256792 Query 43170 ACAAAGATTTGCAT 43183 |||||||| ||||| Sbjct 256791 ACAAAGATCTGCAT 256778 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || || ||||| | || || || | || || |||||||| || Sbjct 257254 GTGCTCTCCTTCTGGATGTTATAATCCGAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCC 257195 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 ||||| ||||| |||||||| || | || | | |||||||||| ||| || || Sbjct 257194 GCGAAGATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTC 257135 Query 43107 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 43166 | | | | |||||| ||| || || || | |||||| || || ||||| || ||| Sbjct 257134 ACGTTATCGATCGTGTCAGACGACTCGACCTCCAGCGTGATAGTCTTCCCCGTGAGGGTC 257075 Query 43167 TTTACAAAGATTTGCATT 43184 || || || || |||||| Sbjct 257074 TTGACGAAAATCTGCATT 257057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816613614640