Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1 102 2e-16 seq51 86.0 1e-11 >seq1 Length=3841264 Score = 102 bits (112), Expect = 2e-16 Identities = 228/338 (67%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 248826 CTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGA 248885 ||||| |||||| ||||||||| || || || || || | | ||| | | || Sbjct 3254809 CTTTGGTTTCAAGACGCTGGAGCGTTCATACCTGCTGAAGCTCAACGGCCGCGTAGCAGA 3254750 Query 248886 ACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAG 248945 || || ||| | | ||||| || || ||||| || || |||||||| ||| | Sbjct 3254749 GCGGCCACAACACCTACTCATGCGTGTCGCAGTCGGTATACATGGCGATGACATCGAGCG 3254690 Query 248946 CGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCT 249005 ||||| ||||| ||| | ||| || || | | ||||| || |||| || || Sbjct 3254689 GGTGCTTGAGACCTACCACCTCATGTCAGAGCGTTACTTCACACACGCTTCACCTACCCT 3254630 Query 249006 CTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAG 249064 ||||||||||||||| | || || |||| ||||||| ||||| | || |||| | | Sbjct 3254629 CTTCAACGCCGGTACTCCTC-ACCCTCAGATGAGCTCATGCTTCTTAGTTTGCATGAAGG 3254571 Query 249065 ACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCG--AAGATTTCTAAATT 249122 ||||||| |||| || ||||| ||| || || ||| ||| | ||| ||| Sbjct 3254570 ACGACTCCATCGAGGGGATTTACTCCACCCTCAA--GGACTGCGCCATGATCAGCAAAAC 3254513 Query 249123 CGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAG 249160 || ||||| || |||||| | || ||||||||||| Sbjct 3254512 TGCCGGCGGTATTGGTCTCAACATCCACAACATCCGAG 3254475 >seq51 Length=3165537 Score = 86.0 bits (94), Expect = 1e-11 Identities = 147/210 (70%), Gaps = 14/210 (7%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| |||| |||||| | || | ||||| || ||||| ||||| |||||||| Sbjct 1579181 ACACCGGCCTTGGAGTACTCCGATACGCGCTTCTCGAAGAAGTTCGTCTTGCCCTGGAGC 1579240 Query 157304 GAAATCATGTCCATCCACTCGAATGGGT---TGGCGCAGTTGTACACCTTGTCGTACCCC 157360 || ||||||||||| | ||||| |||| || ||| || ||| ||| |||| || Sbjct 1579241 GAGATCATGTCCATGAAGTCGAAGGGGTTCGTGACGCCGTAGTA---CTTCTCGTCACCG 1579297 Query 157361 AGCTGGTTCAGCCAGTA----GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTC 157416 || || || | |||| ||| || || |||| |||||||| |||| ||| Sbjct 1579298 AG--GG--CAACGAGTAGACGGTCGGCGACGAACTCGATGTACTGGCACATGAGCTTGGA 1579353 Query 157417 GCTGATACCGATGAGCGCGACGGGAAGCGC 157446 | | || |||||||||||| ||||| || Sbjct 1579354 GTTCATGCCGATGAGCGCGCATGGAAGGGC 1579383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073764501446784