Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq51 181 9e-41 seq1 134 1e-26 seq2 114 1e-20 >seq51 Length=3165537 Score = 181 bits (200), Expect = 9e-41 Identities = 304/438 (69%), Gaps = 14/438 (3%) Strand=Plus/Plus Query 57696 GCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAA 57755 || || |||||||| || || ||||| || |||||||| | ||||| | || || | Sbjct 1581494 GCCTTCTTCGCCGCCTCAGACGGTATCGTGAACGAGAACCTTGTCGAGCGGTTCTCGAAT 1581553 Query 57756 GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTG 57815 ||||| || | ||||||| | ||||| ||||| ||||| | || ||||||||| Sbjct 1581554 GAAGTCCAGGCCGCGGAGGCCCGCTGCTTCTACGGCTTTCAGATAATGATCGAAAACGTG 1581613 Query 57816 CATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGT 57875 || || || | ||||| || ||||| || || ||| | ||||| || |||| ||| Sbjct 1581614 CACTCTGAGACCTATTCCCTCCTCATTGACACCTACATCAAGGATCCCGCCGAG---CGT 1581670 Query 57876 AGA---CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCA 57932 | || ||| |||| ||||| || || || ||| ||||||||||| ||| || Sbjct 1581671 ACCTTCCTCTTCGACGCCATCGAGACCATCCCATGCATCAAGAAGAAGGCAGACTGGGCA 1581730 Query 57933 ATCAAATGGATA----AAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGC 57988 || |||||| | ||||| | |||||| ||| |||| | || ||||| Sbjct 1581731 CTCCGCTGGATATCTGACGAGCGCTCAGT----GTTCGCTGAGCGGCTCGTTGCCTTCGC 1581786 Query 57989 CGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACG 58048 ||||||||| ||||| ||||| || || || || | || || ||||| ||||| || Sbjct 1581787 CGCCGTCGAGGGTATCTTCTTCTCTGGTTCATTCGCCTCCATCTTCTGGATCAAGAAGCG 1581846 Query 58049 CGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCA 58108 ||| || ||||||||||| || ||| |||||| | || ||||||||||| | || Sbjct 1581847 CGGGCTAATGCCCGGCCTCACATTTTCGAACGAGCTCATCAGCCGCGACGAGGGGATGCA 1581906 Query 58109 TACTGATTTTGCGTGCCT 58126 ||||| || || || || Sbjct 1581907 CACTGACTTCGCCTGTCT 1581924 Score = 178 bits (196), Expect = 1e-39 Identities = 411/613 (67%), Gaps = 20/613 (3%) Strand=Plus/Minus Query 57524 AGAGAATCCC--CGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATG 57581 || |||||| ||| | || ||| | || || || |||| | || || ||| | ||| Sbjct 1580136 AGGGAATCCAAGCGTCGCTTCGTCCTCTTCCCCATCCAATACCACGAAATCTGGCAGATG 1580077 Query 57582 TACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTG 57641 ||||||||||| || || || || ||||| | || || | || ||||| ||||| || Sbjct 1580076 TACAAAAAGGCTGAGGCCTCCTTCTGGACGGCGGAGGAGATGGATCTGTCCAAGGACCTC 1580017 Query 57642 AGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCG 57698 ||| ||| | || |||| || |||| | | || || ||||| | || Sbjct 1580016 CACGACTGGAACAACCGCCTCAACGACGATGAGCGTCACTTCATCTCCCACGTCCTCGCC 1579957 Query 57699 TTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAA 57758 || ||||| || ||||||||||| || |||||||| | ||||| | || || | || Sbjct 1579956 TTCTTCGCTGCGTCCGATGGTATCGTCAACGAGAACCTCGTCGAGCGTTTCTCCAACGAG 1579897 Query 57759 GTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCAT 57818 || || | ||||||| | ||||| ||||| || ||| | || || ||| | || Sbjct 1579896 GTCCAGGCCGCGGAGGCACGCTGCTTCTACGGTTTCCAAATCATGATGGAGAACATTCAC 1579837 Query 57819 TCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA----CAACGACGAGAAACG 57874 || || | || || || |||||||| || ||| | ||||| || | || ||| Sbjct 1579836 TCCGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGACCCTCAGCAGCGCGAA--- 1579780 Query 57875 TAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAAT 57934 || || ||| | || || || || || || ||| |||||||| || ||| | | Sbjct 1579779 TA-CCTCTTCGATGCCATTGACACGATCCCTTGCATCAAGAAGAAGGCCGACTGGGCTCT 1579721 Query 57935 CAAATGGATAAAAAGCGCCA---CGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGC 57991 ||||| |||| || || | || || ||| | || |||| || ||||| Sbjct 1579720 TCGTTGGAT---CAGCGACAAGGAGGTTGCCTTTGCGGAGCGTCTCGTCGCCTTTGCCGC 1579664 Query 57992 CGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGG 58051 |||||| ||||| ||||| |||||| || || | || || ||| ||||||| || || Sbjct 1579663 CGTCGAGGGTATCTTCTTCTCGGGCTCGTTCGCCTCCATCTTCTGGCTGAAGAAGCGTGG 1579604 Query 58052 CCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATAC 58111 ||| ||| |||| || || || ||||||| | || || || ||||||||| | || || Sbjct 1579603 CCTCATG-CCGGTCTCACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTATGCACAC 1579545 Query 58112 TGATTTTGCGTGC 58124 || ||||||||| Sbjct 1579544 GGACTTTGCGTGC 1579532 >seq1 Length=3841264 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || || || || ||||| || || ||||||| || || ||||| |||||||| ||||| Sbjct 3254179 AAGAGGTCGGGAATCCAAAGGGCATAGAACAAGTCACGAGCGCGAACCTCCTCCTTGCCA 3254238 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 |||||| || ||||| || || || ||||||| |||||||||||| | ||| | | Sbjct 3254239 TGGTTCTTGCGCAGGTCCAAGAACTCGAAGACGTCCGGATGCCACGGCTCCAAGTAGATG 3254298 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 || || || || || | ||| ||||| || || |||||||| ||||| || || | | Sbjct 3254299 GCGAATGCACCAGGGCGCTTGTTGCCACCTTGGTCGACGTAGCGGGCGGTAGAGTCGAAG 3254358 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGA 23565 || | ||||| || |||| ||||||||| Sbjct 3254359 ACGCGGAGCATGGGGACGATACCGTTGGA 3254387 Score = 89.7 bits (98), Expect = 5e-13 Identities = 215/320 (67%), Gaps = 4/320 (1%) Strand=Plus/Plus Query 22107 TGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCG 22166 |||| || || |||| || || | || ||||| || || || || |||||||||| Sbjct 3252784 TGTCGACGGTGAACTTGATCGCCTGCGCAGCCGGGCGAGTACGGAGGTAGTACATGCCCG 3252843 Query 22167 TCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCA 22226 |||| |||||| ||||||| |||| || || || ||| | | || ||||| Sbjct 3252844 TCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATGCTCGTGAGCTGACCCATGGTCGGCG 3252903 Query 22227 AGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCA 22286 | | || || | |||| ||||| ||| ||| ||||| || || || || || | Sbjct 3252904 ATTGCAGGTGGATGTTGAGAGACTGCGACTGGCAGATGAACGCGCCACGGTCCGCAGCGA 3252963 Query 22287 TATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCC-TGATCTCT 22345 || || | | | ||| || ||||| ||||||||||| | | ||| ||| || Sbjct 3252964 GATCGATGACCTTCTTCTGCGAGATCTCCCAGACGGTCTTGTAGA-TCGCCTTGACGTCG 3253022 Query 22346 AACGGTATCGAT-TCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAAT 22404 || || ||| ||||| ||||||| || ||||| ||| ||||||| || || || Sbjct 3253023 TCTGGAAT-GATGTCGATGTTCTGGACCGATCCGTTGTTGGCAATGATCATGTTCTTCAT 3253081 Query 22405 CGTATCGTTCCACAAACCGA 22424 ||||||||||| ||||| Sbjct 3253082 GTCATCGTTCCACAGACCGA 3253101 >seq2 Length=1429897 Score = 114 bits (126), Expect = 1e-20 Identities = 154/213 (72%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||||||||| ||||| ||||||||| |||| || || | || Sbjct 256496 CATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACGATCACCCTCGAGGTCGAGTCCTC 256555 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | |||||| | || ||||||||| ||| | ||||| ||||| Sbjct 256556 GGATACCATTGACAACGTCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 256615 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||||||||| ||| | || ||| | ||| | ||| || || Sbjct 256616 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACTCTTTCCGACTACAA 256675 Query 31372 CATTCAAAAAGAATCGACTCTTCATC-TGGTAC 31403 |||||| || || || || || || | |||||| Sbjct 256676 CATTCAGAAGGAGTCAACCCTCCACCTTGGTAC 256708 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||||||||| ||||| |||||||| |||| || || | || Sbjct 256777 CATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACTCTCGAGGTGGAGTCTTC 256836 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| |||| | ||||| || || || ||| ||||| || | || || |||| Sbjct 256837 GGACACCATCGACAACGTCAAGGCAAAG-ATTCAGGATAAGGAGGGTATTCCCCCGGACC 256895 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||||| | || || || || || || |||| || || || ||| || | Sbjct 256896 AGCAGCGGTTGATCTTTGCGGGTAAGCAACTGGAGGATGGCCGCACGCTGTCCGACTACA 256955 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCT-GGTA 31402 ||||||| || || ||||| |||||||| |||| Sbjct 256956 ACATTCAGAAGGAGTCGACCCTTCATCTCGGTA 256988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765631052960