Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq62 93.3 3e-14 seq51 86.0 4e-12 >seq62 Length=3011317 Score = 93.3 bits (102), Expect = 3e-14 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 33575 AGATGGGCGACAAGTTTGCATCG-TTCACGGCCCAGAAGGGCACGTGCGGCATGATGTAC 33633 |||| |||||||||||||| ||| |||||| |||||||| || ||| || | ||| Sbjct 181668 AGATCGGCGACAAGTTTGCGTCGCGTCACGG-TCAGAAGGGTACAATCGGTATTACTTAC 181726 Query 33634 GACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTCATCAACCCG 33693 ||| ||||||||| ||||||||||| || | ||| ||| | |||||||||| Sbjct 181727 CGTCAGGAGGACATGCCCTTCACGGCCGAAGGTATCACCCCAGACATCATCATCAACCCC 181786 Query 33694 CATGCGTTCCCCTCGCGCATGAC 33716 ||||| ||||||| || ||||| Sbjct 181787 CATGCCATCCCCTCCCGTATGAC 181809 >seq51 Length=3165537 Score = 86.0 bits (94), Expect = 4e-12 Identities = 120/167 (72%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800 |||||| | |||||||| || || || || || | || || || || || || |||| Sbjct 1579683 CGTCTCGTCGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGCTCGTTCGCCTCCATC 1579624 Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGC 22860 |||||||||||||| ||| |||||||| || | | || ||||||||| | || Sbjct 1579623 TTCTGGCTGAAGAAGCGTGGCCTCATGCC-GGTCTCACCTTCTCCAACGAGCTCATCTCT 1579565 Query 22861 CGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCA 22907 |||||||| ||| | ||| |||||||| || |||| || || || Sbjct 1579564 CGTGACGAGGGTATGCACACGGACTTTGCGTGCTTGCTCTTCAGCCA 1579518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356233000859614