Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq51 152 7e-32 >seq51 Length=3165537 Score = 152 bits (168), Expect = 7e-32 Identities = 386/585 (66%), Gaps = 13/585 (2%) Strand=Plus/Plus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 ||| || || || || ||||| ||||||||| | | || || |||||||| || || Sbjct 1579529 CAAGCACGCAAAGTCCGTGTGCATACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGT 1579588 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAA 50075 ||| |||| ||| ||||||||||| || ||||| || ||||| || || || || || || Sbjct 1579589 GAGACCGG-CATGAGGCCACGCTTCTTCAGCCAGAAGATGGAGGCGAACGAGCCCGAGAA 1579647 Query 50076 GAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA---ACTGGCGCTGTC 50132 |||||| || || || ||||||||||| || || | ||| || | | | |||| Sbjct 1579648 GAAGATACCCTCGACGGCGGCAAAGGCGACGAGACGCTCCGCAAAGGCAACCTCCTTGTC 1579707 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 ||||| ||||||| ||||||||||| || | ||||| ||||| || ||||| Sbjct 1579708 GCTGATCCAACGAAGAGCCCAGTCGGCCTTCTTCTTGATGCAAGGGATCGTGTCAATGGC 1579767 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 || ||||| || | | | | || || | || || ||||| | || || Sbjct 1579768 ATCGAAGAGGTATTCGCGCTGCTGAGGGTCCTTGATGTAGGTGTCGATGAGGAGGGAGTA 1579827 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 | || || |||||||| || || || || || |||||||| || | ||||| | Sbjct 1579828 GGTCTCGGAGTGAATGTTCTCCATCATGATTTGGAAACCGTAGAAGCAGCGTGCCTCCGC 1579887 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 ||| || || | | || || || | | || || || || || || || || Sbjct 1579888 GGCCTGGACCTCGTTGGAGAAACGCTCGACGAGGTTCTCGTTGACGATACCATCGGACGC 1579947 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATG------TTTTTCGTTGGGTGTTAGTTT 50426 || || || || | || || || || || | |||||| | | || Sbjct 1579948 AGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGACGCTCATCGTCGTTGAG---GCGGTT 1580004 Query 50427 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 50486 ||||| || | || || || || | ||| | || ||| | ||||| || || ||||| Sbjct 1580005 GTTCCAGTCGTGGAGGTCCTTGGACAGATCCATCTCCTCCGCCGTCCAGAAGGAGGCCTC 1580064 Query 50487 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531 |||||||| ||||| | |||||| || || |||||||| ||||| Sbjct 1580065 AGCCTTTTTGTACATCTGCCAGATTTCGTGGTATTGGATGGGGAA 1580109 Score = 152 bits (168), Expect = 7e-32 Identities = 355/531 (67%), Gaps = 6/531 (1%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| ||||| || ||||| |||||||| | || || || ||||| ||||| ||||| Sbjct 1581922 ACAGGCGAAGTCAGTGTGCATCCCCTCGTCGCGGCTGATGAGCTCGTTCGAAAATGTGAG 1581863 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 ||||||||||| || ||||| || | ||| || ||||| || ||||| ||||| ||||| Sbjct 1581862 GCCGGGCATTAGCCCGCGCTTCTTGATCCAGAAGATGGAGGCGAATGAACCAGAGAAGAA 1581803 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC-TCCATAACTG-GCGCT-GTCATG 50135 ||| || || || ||||| |||||||| || | ||| | | |||| ||||| |||| Sbjct 1581802 GATACCCTCGACGGCGGCGAAGGCAACGAGCCGCTCAGCGAACACTGAGCGCTCGTCAGA 1581743 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 |||||| | ||||| || |||||||| || | || || || || || ||||| | Sbjct 1581742 TATCCAGCGGAGTGCCCAGTCTGCCTTCTTCTTGATGCATGGGATGGTCTCGATGGCGTC 1581683 Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255 ||||| || | || ||| || | || || || || | || ||| | Sbjct 1581682 GAAGAGGAAGGTACGCTCGGCGGGATCCTTGATGTAGGTGTCAATGAGGAGGGAATAGGT 1581623 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315 || || || | |||||| || |||||||| |||||||| || | ||||| | Sbjct 1581622 CTCAGAGTGCACGTTTTCGATCATTATCTGAAAGCCGTAGAAGCAGCGGGCCTCCGCGGC 1581563 Query 50316 CTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375 ||| ||||| | | || || || | | || || ||||| || ||||| ||| || Sbjct 1581562 CTGGACTTCATTCGAGAACCGCTCGACAAGGTTCTCGTTCACGATACCGTCTGAGGCGGC 1581503 Query 50376 AAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTT---ATTCCA 50432 || || || | |||| | ||||| ||||| || || ||| | ||||| Sbjct 1581502 GAAGAAGGCGAGGACATAGGACAGGAAATGCCGCTCGTTTGGGGTGAGTCTCCCGTTCCA 1581443 Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 50483 || || || | || | || | || |||||||||||||| || || Sbjct 1581442 GTCCCAGAGGTCGTGCGAGAGGTCAATCTCCTCCACTGTCCAAAACGAGGC 1581392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267560986320