Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq51 132 6e-26 >seq51 Length=3165537 Score = 132 bits (146), Expect = 6e-26 Identities = 294/437 (67%), Gaps = 3/437 (1%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| ||||| || ||||| ||||| || | || || | ||||| ||||| ||||| Sbjct 1581922 ACAGGCGAAGTCAGTGTGCATCCCCTCGTCGCGGCTGATGAGCTCGTTCGAAAATGTGAG 1581863 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 ||||||||||| || ||||| || | ||| || || || || ||||| ||||| ||||| Sbjct 1581862 GCCGGGCATTAGCCCGCGCTTCTTGATCCAGAAGATGGAGGCGAATGAACCAGAGAAGAA 1581803 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC-TCCATAACCG-GCACT-GTCATG 42240 ||| || || || || || ||||||| || | ||| | | || | || || |||| Sbjct 1581802 GATACCCTCGACGGCGGCGAAGGCAACGAGCCGCTCAGCGAACACTGAGCGCTCGTCAGA 1581743 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 |||||| | ||||| || |||||||| || | || || || || || ||||| | Sbjct 1581742 TATCCAGCGGAGTGCCCAGTCTGCCTTCTTCTTGATGCATGGGATGGTCTCGATGGCGTC 1581683 Query 42301 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACAT 42360 ||||| || | || ||| || | || || || || | || ||| | Sbjct 1581682 GAAGAGGAAGGTACGCTCGGCGGGATCCTTGATGTAGGTGTCAATGAGGAGGGAATAGGT 1581623 Query 42361 TTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAAC 42420 || || || | |||||| || |||||||| |||||||| || | |||||| | | Sbjct 1581622 CTCAGAGTGCACGTTTTCGATCATTATCTGAAAGCCGTAGAAGCAGCGGGCCTCCGCGGC 1581563 Query 42421 CTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGC 42480 ||| ||||| | | || || || | | || |||||||| || ||||| ||| || Sbjct 1581562 CTGGACTTCATTCGAGAACCGCTCGACAAGGTTCTCGTTCACGATACCGTCTGAGGCGGC 1581503 Query 42481 AAAAAACGCCAATACAT 42497 || || || | |||| Sbjct 1581502 GAAGAAGGCGAGGACAT 1581486 Score = 131 bits (144), Expect = 2e-25 Identities = 381/583 (65%), Gaps = 9/583 (2%) Strand=Plus/Plus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 ||| || || || || ||||| |||||| || | | || | |||||||| || || Sbjct 1579529 CAAGCACGCAAAGTCCGTGTGCATACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGT 1579588 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAA 42180 ||| |||| ||| ||||||||||| || ||||| || || || || || || || || || Sbjct 1579589 GAGACCGG-CATGAGGCCACGCTTCTTCAGCCAGAAGATGGAGGCGAACGAGCCCGAGAA 1579647 Query 42181 GAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTC 42237 |||||| || || || || |||||||| | || | ||| || | | | | |||| Sbjct 1579648 GAAGATACCCTCGACGGCGGCAAAGGCGACGAGACGCTCCGCAAAGGCAACCTCCTTGTC 1579707 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 ||||| ||||||| ||||||||||| || | ||||| ||||| || ||||| Sbjct 1579708 GCTGATCCAACGAAGAGCCCAGTCGGCCTTCTTCTTGATGCAAGGGATCGTGTCAATGGC 1579767 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 || ||||| || | | | | || || | || || ||||| | || || Sbjct 1579768 ATCGAAGAGGTATTCGCGCTGCTGAGGGTCCTTGATGTAGGTGTCGATGAGGAGGGAGTA 1579827 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 | || || |||||||| || || || || || |||||||| || | ||||| | Sbjct 1579828 GGTCTCGGAGTGAATGTTCTCCATCATGATTTGGAAACCGTAGAAGCAGCGTGCCTCCGC 1579887 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 |||| || || | | || || || | | || ||||| || || || || || Sbjct 1579888 GGCCTGGACCTCGTTGGAGAAACGCTCGACGAGGTTCTCGTTGACGATACCATCGGACGC 1579947 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA----TTTAT 42533 || || || || | || || || || | || | || ||| | || | Sbjct 1579948 AGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGACGCTCAT-CGTCGTTGAGGCGGTTGT 1580006 Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593 |||| || | || || || || | ||| | || || ||||||| || || || || | Sbjct 1580007 TCCAGTCGTGGAGGTCCTTGGACAGATCCATCTCCTCCGCCGTCCAGAAGGAGGCCTCAG 1580066 Query 42594 CCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAA 42636 ||||||| ||||| | |||||| || || ||||| || ||||| Sbjct 1580067 CCTTTTTGTACATCTGCCAGATTTCGTGGTATTGGATGGGGAA 1580109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138042284880