Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 120 3e-22 seq62 113 4e-20 >seq2 Length=1429897 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | ||||| || ||| ||||||| || ||||| | | Sbjct 256778 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACTCTCGAGGTGGAGTCTTCG 256837 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| ||| ||||| || |||||||||||||| || || || Sbjct 256838 GACACCATCGACAACGTCAAGGCAAAGATTCAGGATAAGGAGGGTATTCCCCCGGACCAG 256897 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| || || || | |||||| |||||| | ||||| |||||| Sbjct 256898 CAGCGGTTGATCTTTGCGGGTAAGCAACTGGAGGATGGCCGCACGCTGTCCGACTACAAC 256957 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 ||||| || || || ||| | ||| Sbjct 256958 ATTCAGAAGGAGTCGACCCTTCAT 256981 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || || ||| |||| || || || || || | Sbjct 256497 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 256556 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | ||||| || || || ||||||||||| || || || || || Sbjct 256557 GATACCATTGACAACGTCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 256616 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| ||||| | ||||| |||||| Sbjct 256617 CAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACTCTTTCCGACTACAAC 256676 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || || ||| Sbjct 256677 ATTCAGAAGGAGTCAACC 256694 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||||||||| || || ||||| || ||||| || || || ||||| Sbjct 257142 AAGATCCAGGACAAGGAGGGTATCCCCCCGGATCAGCAGCGTCTCATCTTCGCGGGCAAG 257201 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGA 22409 ||| | |||||| |||||| |||| ||||| ||||| || || || Sbjct 257202 CAGCTCGAGGATGGCCGCACGCTCTCGGATTATAACATCCAGAAGGA 257248 >seq62 Length=3011317 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||| || || || || | | Sbjct 735531 ATGCAGATCTTCGTCAAGACGTTGACGGGCAAGACTATCACCCTCGAGGTCGAGTCGTCG 735472 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || ||||||||||||||||| ||||| || || || Sbjct 735471 GATACCATCGACAACGTCAAGGCGAAGATTCAAGACAAGGAGGGCATTCCGCCTGACCAG 735412 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| || ||||| || || | |||||| |||||| | || || |||||| Sbjct 735411 CAACGTCTTATCTTCGCCGGTAAGCAACTGGAGGATGGTCGCACCTTGTCGGACTACAAC 735352 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 735351 ATTCAGAAGGAGTCAAC 735335 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || ||| |||| | || || ||| | | Sbjct 734968 GATGCAGATATTCGTGAAGACGCTCACGGGCAAGACGATCACGTTGGAGGTCGAATCTTC 734909 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | ||| | | || || ||||| || |||||||||||||| || || || Sbjct 734908 GGACACGATCGACAACGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCGCCAGACCA 734849 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| || || || || || ||||| ||| | ||||| ||||| |||| |||||||| Sbjct 734848 ACAGCGCCTCATCTTCGCGGGCAAGCAGCTGGAGGACGGGCGCACGCTCTCGGATTACAA 734789 Query 22398 CATTCAAAAAGA 22409 ||| || ||||| Sbjct 734788 CATCCAGAAAGA 734777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727294069970