Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq24 113 9e-20 seq51 96.9 7e-15 >seq24 Length=1300624 Score = 113 bits (124), Expect = 9e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764 || || |||||||||||||||||||| || ||| | || || || || | ||||| || Sbjct 845076 CTTTCCGGTGGTTGGAAGATGAAGCTCGCTCTCGCCCGTGCGATGCTCTTCCGTGCTGAC 845135 Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824 |||| || || |||||||| ||||||||| |||| | |||||| || ||||| | | Sbjct 845136 ATCCTGCTCCTCGATGAGCCGACCAACCACTTGGATGTCGTCAACGTCGCGTGGCTCGAG 845195 Query 279825 TCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTC 279884 |||| | || || || |||| | || |||| ||||| |||||||| |||||| Sbjct 845196 AACTACTTGACGAGCCTCAAGACGTGCACGTCGATCATCGTCTCGCACGACTCGGGCTTC 845255 Query 279885 CT 279886 || Sbjct 845256 CT 845257 Score = 98.7 bits (108), Expect = 2e-15 Identities = 136/188 (72%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| |||| ||||| ||| | || ||||| || || |||| | || | |||||| | Sbjct 845547 GTCCTTGGCCCCAACGGTTCCGGCAAGTCCACGCTCGTCAAGCTTCTCATTGGCGACATG 845606 Query 280233 CAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || | | |||| || | | |||||||| || ||| || || | ||||||||| Sbjct 845607 GAGCCGAACAAGGGCGGTGAGATCTGGAAGCACCCGAACTTGGTCATCGGTTACGTCGCG 845666 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 |||||||| |||||||||||||| |||||||| |||| ||| || | | ||||| | Sbjct 845667 CAGCACGCCTTCCACCACATCGACAACCACCTCGACAAGACCCCGCTCGAGTACATGCTC 845726 Query 280350 TGGCGCTA 280357 |||||||| Sbjct 845727 TGGCGCTA 845734 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| ||||| |||| | ||||||||||| || |||| |||||| || || ||| Sbjct 844669 GGTGAGGACCTGTGCAACTGCCAGTTCTCGCTCGCCTACGGTGCGAAGATCCTTCTCAAC 844728 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 | | ||||| ||||||| ||| |||| || ||||| ||||| ||| || | Sbjct 844729 ACCGCGAGCCTCCGTCTCAAGCGCGGCCACCGCTACGGTCTTTGCGGTCGCAACGGTACC 844788 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGG 279499 || ||| ||| || |||||||| || | ||||| Sbjct 844789 GGAAAGTCCACCCTCATGCGCGCGATCACCAACGG 844823 >seq51 Length=3165537 Score = 96.9 bits (106), Expect = 7e-15 Identities = 213/317 (67%), Gaps = 7/317 (2%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||||| ||||||||||| ||||||| |||||| || | ||||| ||||| | ||| Sbjct 1581907 GTGCATCCCCTCGTCGCGGCTGATGAGCTCGTTCGAAAATGTGAGGCCGGGCATTAGCCC 1581848 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 || ||| ||| ||||||||| | | || || |||||||| | | ||||||||| Sbjct 1581847 GCGCTTCTTGATCCAGAAGATGGAGGCGAATGAACCAGAGAAGAAGATACCCTCGACGGC 1581788 Query 251964 CACCCATGCAACAAGGCGCTCAGCAAACGACTTGTCCTGCGACAAGAACTTC-----TGT 252018 | | ||||| || |||||||| ||| ||| | || | ||| | | || Sbjct 1581787 GGCGAAGGCAACGAGCCGCTCAGCGAAC-ACTGAGCGCTCGTC-AGATATCCAGCGGAGT 1581730 Query 252019 GCCCATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTC 252078 ||||| |||||||||| | ||||| || ||||| || || ||||| || | Sbjct 1581729 GCCCAGTCTGCCTTCTTCTTGATGCATGGGATGGTCTCGATGGCGTCGAAGAGGAAGGTA 1581670 Query 252079 CGCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 |||||||| |||| |||| | |||| ||||| || || |||| || || | | Sbjct 1581669 CGCTCGGCGGGATCCTTGATGTAGGTGTCAATGAGGAGGGAATAGGTCTCAGAGTGCACG 1581610 Query 252139 GATTCGTTGAACATCTG 252155 |||| | | ||||| Sbjct 1581609 TTTTCGATCATTATCTG 1581593 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | ||| || || | |||||||||||||| ||||| || Sbjct 1582248 TCGAAGAAGTTCGTCTTGCCTTGCAGCGATATCATGTCCATGAAGTCGAACGGGTTCGTC 1582189 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| |||||| || ||||| || || | | ||||| ||||| ||||| | Sbjct 1582188 GCGTTGTAGTGCTTGTCATTTCCAAGCGCGACCAGCAGTCGGTCGGCCACGAACTCGATG 1582129 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 || || | ||||| | | ||||||||| || Sbjct 1582128 TATTGACACATCAACTGGGCGTTCATGCCTAT 1582097 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 251545 TATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATG 251604 || || ||||| || |||||||| || | |||||||| || ||||| | |||||| Sbjct 1579196 TACTCCGATACGCGCTTCTCGAAGAAGTTCGTCTTGCCCTGGAGCGAGATCATGTCCATG 1579255 Query 251605 AAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGG 251664 |||||||||||||| ||| | ||| | ||| | || || || |||| | ||| Sbjct 1579256 AAGTCGAAGGGGTTCGTGACGCCGTAGTACTTCTCGTCACCGAGGGCAACGAGTAGACGG 1579315 Query 251665 TCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 || || || ||||| | ||||| | ||| || | ||||||||||| || Sbjct 1579316 TCGGCGACGAACTCGATGTACTGGCACATGAGCTTGGAGTTCATGCCGAT 1579365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834982656058