Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq62 152 1e-31 seq2 150 4e-31 seq51 86.0 1e-11 >seq62 Length=3011317 Score = 152 bits (168), Expect = 1e-31 Identities = 161/211 (76%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 288266 CGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTA 288325 ||||||||| |||||| ||||| ||||| || || || | ||||||||| ||||| || | Sbjct 734760 CGAGATGAAGCGTGCTCTCTTTCTGGATGTTGTAATCCGAGAGCGTGCGCCCGTCCTCCA 734819 Query 288326 ATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCT 288382 || || || |||||||| || |||||||| ||||| || || || ||||||| Sbjct 734820 GCTGCTTGCCCGCGAAGATGAGGCGCTGTTGG---TCTGGCGGAATACCCTCCTTATCCT 734876 Query 288383 GGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCT 288442 | || ||||| |||||||| || || | || ||||| || || | ||||||||||| Sbjct 734877 GAATCTTCGCCTTCACGTTGTCGATCGTGTCCGAAGATTCGACCTCCAACGTGATCGTCT 734936 Query 288443 TCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| |||||||||||||| Sbjct 734937 TGCCCGTGAGCGTCTTCACGAATATCTGCAT 734967 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 288266 CGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTA 288325 |||| |||| ||| || || || || || ||||| | | ||||| || || || | Sbjct 735324 CGAGGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCCGACAAGGTGCGACCATCCTCCA 735383 Query 288326 ATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGA 288385 ||| || || |||||||| ||||| || || | || || || || || || || | Sbjct 735384 GTTGCTTACCGGCGAAGATAAGACGTTGCTGGTCAGGCGGAATGCCCTCCTTGTCTTGAA 735443 Query 288386 TTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCC 288445 | ||||| || ||||| || || | ||| ||| || || ||||| ||||| ||||| | Sbjct 735444 TCTTCGCCTTGACGTTGTCGATGGTATCCGACGACTCGACCTCGAGGGTGATAGTCTTGC 735503 Query 288446 CGGTCAGAGTCTTGACGAATATCTGCATT 288474 | |||| ||||||||||| ||||||||| Sbjct 735504 CCGTCAACGTCTTGACGAAGATCTGCATT 735532 >seq2 Length=1429897 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || || | ||||| || || ||||| ||||| || | | Sbjct 257284 CCACCACGCAGGCGGAGGACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTATAATCCGAG 257225 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || |||||||| |||||||| ||| ||| Sbjct 257224 AGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGATCCGGGGGG 257165 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||||| |||||||| || || | || ||| || || Sbjct 257164 ATACCCTCCTTGTCCTGGATCTTCGCCTTCACGTTATCGATCGTGTCAGACGACTCGACC 257105 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || |||||||| |||||||| || || ||||||||||| ||||||||| Sbjct 257104 TCCAGCGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATT 257057 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| || ||||| ||||| || | || || || |||||| Sbjct 256687 TCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAG 256628 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || | ||||| || || || |||||||| || ||||| ||||| Sbjct 256627 ATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTG 256568 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || || ||||| ||||||||||| || |||||||||||||| Sbjct 256567 TCAATGGTATCCGAGGACTCGACCTCGAGGGTGATCGTCTTGCCAGTCAGAGTCTTGACA 256508 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 256507 AAGATCTGCAT 256497 Score = 120 bits (132), Expect = 7e-22 Identities = 154/211 (73%), Gaps = 6/211 (3%) Strand=Plus/Minus Query 288266 CGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTA 288325 ||||||||| || || || || || || ||||||| |||||||| || || || | Sbjct 256985 CGAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTGCGGCCATCCTCCA 256926 Query 288326 ATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCT 288382 ||| || || || ||||||| ||||| || || ||| || || || ||||||| Sbjct 256925 GTTGCTTACCCGCAAAGATCAACCGCTGCTGG---TCCGGGGGAATACCCTCCTTATCCT 256869 Query 288383 GGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCT 288442 | || || || || ||||| || || | || || || || ||||| |||||||||| Sbjct 256868 GAATCTTTGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGAGTGATCGTCT 256809 Query 288443 TCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||||||||||||||| || |||||||| Sbjct 256808 TGCCGGTCAGAGTCTTGACAAAGATCTGCAT 256778 >seq51 Length=3165537 Score = 86.0 bits (94), Expect = 1e-11 Identities = 119/164 (73%), Gaps = 6/164 (4%) Strand=Plus/Minus Query 269152 ATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTC 269211 ||||| ||||| || | |||||| || || ||||| ||||| || || ||| | || Sbjct 1579365 ATCGGCATGAACTCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGTCTACTC 1579306 Query 269212 ACGGCACTCGGTTATGAGAAAGTGTACAATT-CG--AAGAATCCCTTCGCCTTTATGGAA 269268 || |||||| | ||||| |||| | || | ||| ||||||| ||| ||||| Sbjct 1579305 GTTGCCCTCGGTGACGAGAA---GTACTACGGCGTCACGAACCCCTTCGACTTCATGGAC 1579249 Query 269269 CTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGT 269312 | || |||||| | || ||||||||||||||||| ||||| || Sbjct 1579248 ATGATCTCGCTCCAGGGCAAGACGAACTTCTTCGAGAAGCGCGT 1579205 Score = 84.2 bits (92), Expect = 5e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 269152 ATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTC 269211 || || ||||| ||| | | ||| |||||| ||||| |||||||| || || | | Sbjct 1582097 ATAGGCATGAACGCCCAGTTGATGTGTCAATACATCGAGTTCGTGGCCGACCGACTGCTG 1582156 Query 269212 ACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTA 269271 || || || |||| || ||||| ||| ||| || |||| ||| ||||| | Sbjct 1582157 GTCGCGCTTGGAAATGACAAGCACTACAACGCGACGAACCCGTTCGACTTCATGGACATG 1582216 Query 269272 ATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGT 269312 || ||||| |||| ||||||||||||||||| ||||| || Sbjct 1582217 ATATCGCTGCAAGGCAAGACGAACTTCTTCGAGAAGCGCGT 1582257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652314223564