Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq51 122 1e-22 seq1 87.8 3e-12 >seq51 Length=3165537 Score = 122 bits (134), Expect = 1e-22 Identities = 373/573 (65%), Gaps = 3/573 (1%) Strand=Plus/Plus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || || | |||||||||||| ||||| |||||||| |||||||||| ||||||||| Sbjct 1579524 AAGAGCAAGCACGCAAAGTCCGTGTGCATACCCTCGTCACGAGAGATGAGCTCGTTGGAG 1579583 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | | ||| | ||||||||| |||||| || ||||| || |||| || || | || Sbjct 1579584 AAGGTGA-GACCGGCATGAGGCCACGCTTCTTCAGCCAGAAGATGGAGGCGAACGAGCCC 1579642 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 || ||||| ||||| ||||| ||||| || ||||| | ||| |||| | | | Sbjct 1579643 GAGAAGAAGATACCCTCGACGGCGGCAAAGGCGACGAGACGCTCCGCAAAGGCAACCTCC 1579702 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCG 160153 |||| | |||| | ||||| || |||||||| |||||| || || || Sbjct 1579703 TTGTCGCTGATCCAACGAAGAGCCCAGTCGGCCTTCTTCTTGATGCAAGGGATCGTGTCA 1579762 Query 160154 ACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTC 160213 | ||| | || | || ||| || |||||||| || | || || Sbjct 1579763 ATGGCATCGAAGAGGTATTCGCGCTGCTGAGGGTCCTTGATGTAGGTGTCGATGAGGAGG 1579822 Query 160214 GAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCC 160273 ||||| | || | ||| | || || || || || || |||||| | ||| Sbjct 1579823 GAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATTTGGAAACCGTAGAAGCAGCGTGCC 1579882 Query 160274 TCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCG 160333 ||| ||| ||||| | | ||| | | | || || | || || | || ||| Sbjct 1579883 TCCGCGGCCTGGACCTCGTTGGAGAAACGCTCGACGAGGTTCTCGTTGACGATACCATCG 1579942 Query 160334 GCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTC 160393 | || || ||||| || | ||||| |||||||| || | ||| || | |||||| | Sbjct 1579943 GACGCAGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGACGCTCATCGTCGTTGAGGCGG 1580002 Query 160394 TTTTCCCAGT-GTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGC 160452 || | ||||| ||| | ||| | || || ||| | ||| ||||| |||| || || Sbjct 1580003 TTGTTCCAGTCGTG-GAGGTCCTTGGACAGATCCATCTCCTCCGCCGTCCAGAAGGAGGC 1580061 Query 160453 CTGAGCAGTTTTGTACATGGCCCAGATGGCGTG 160485 || ||| |||||||||| |||||| |||| Sbjct 1580062 CTCAGCCTTTTTGTACATCTGCCAGATTTCGTG 1580094 >seq1 Length=3841264 Score = 87.8 bits (96), Expect = 3e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 203841 TGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGG 203900 |||| || ||||||| || || | | | || || | | | || ||||||||||| | Sbjct 3252784 TGTCGACGGTGAACTTGATCGCCTGCGCAGCCGGGCGAGTACGGAGGTAGTACATGCCCG 3252843 Query 203901 TCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGT 203960 |||| || ||||||| ||| ||||| | ||||||| | || | | || | | || Sbjct 3252844 TCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATGCTCGTGAGCTGACCCATGGTCGGCG 3252903 Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCC 204019 || ||| ||||| |||||||| ||| |||| || ||||| || || || || Sbjct 3252904 ATTGCAGGTGGATGTTGAGAGACTGCGACTGGCAGATG-AACGCGCCACGGTCCGCAGCG 3252962 Query 204020 ATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 | || ||| | |||||||||| |||||||| || |||||| Sbjct 3252963 AGATCGATGACCTTCTTCTGCGAGATCTCCCAGACGGTCTTG 3253004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795153828357280