Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2 134 2e-26 seq62 132 5e-26 seq35 87.8 2e-12 seq13 87.8 2e-12 >seq2 Length=1429897 Score = 134 bits (148), Expect = 2e-26 Identities = 147/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||||| |||||||| |||| |||||||||||||| ||||| Sbjct 256688 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAA 256629 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | ||| | || |||||||||| |||||| |||| ||| Sbjct 256628 GATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTGA-CGT 256570 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | || || || || || || | ||||| || ||||| ||||| || || | Sbjct 256569 TGTCAATGGTATCCGAGGACTCGACCTCGAGGGTGATCGTCTTGCCAGTCAGAGTCTTGA 256510 Query 46581 CAAAGATTTGCAT 46593 ||||||| ||||| Sbjct 256509 CAAAGATCTGCAT 256497 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| ||||| || || || || || ||||| | || |||||||||||||| Sbjct 257254 GTGCTCTCCTTCTGGATGTTATAATCCGAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCC 257195 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| || | |||||||| || | || | | |||||||||| ||||||| ||| Sbjct 257194 GCGAAGATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTC 257135 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | |||||| ||| || || |||| |||||| || || ||||| || || Sbjct 257134 ACGTTATCGATCGTGTCAGACGACTCGACCTCCAGCGTGATAGTCTTCCCCGTGAGGGTC 257075 Query 46577 TTAACAAAGATTTGCATT 46594 || || || || |||||| Sbjct 257074 TTGACGAAAATCTGCATT 257057 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||||| || ||||| | || || || ||||| || || || Sbjct 256969 CTCCTTCTGAATGTTGTAGTCGGACAGCGTGCGGCCATCCTCCAGTTGCTTACCCGCAAA 256910 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | | |||||| ||| ||||| ||||| ||| Sbjct 256909 GATCAACCGCTGCTGGTCCGGGGGAATACCCTCCTTATCCTGAATCTTTGCCTTGA-CGT 256851 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || ||||| || | ||||| || ||||| ||||| || || | Sbjct 256850 TGTCGATGGTGTCCGAAGACTCCACCTCGAGAGTGATCGTCTTGCCGGTCAGAGTCTTGA 256791 Query 46581 CAAAGATTTGCAT 46593 ||||||| ||||| Sbjct 256790 CAAAGATCTGCAT 256778 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || ||||| || |||| |||||||||||||||||||| Sbjct 256398 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 256339 Query 46462 TATCAAGCGCTGCTGGTCGG 46481 || | ||||||||| |||| Sbjct 256338 GATGAGGCGCTGCTGATCGG 256319 >seq62 Length=3011317 Score = 132 bits (146), Expect = 5e-26 Identities = 159/212 (75%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 46384 CACC-AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGT 46442 |||| ||||| | || ||||| || ||||| ||||| || || || |||||| |||| | Sbjct 734757 CACCGAGATGAAGCGTGCTCTCTTTCTGGATGTTGTAATCCGAGAGCGTGCGCCCGTCCT 734816 Query 46443 CGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCA 46502 | ||||||||||| ||||| || | |||||| ||||| | ||| | | |||||| ||| Sbjct 734817 CCAGCTGCTTGCCCGCGAAGATGAGGCGCTGTTGGTCTGGCGGAATACCCTCCTTATCCT 734876 Query 46503 TGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTT 46561 |||||| ||| | ||| | | | |||||| ||||| || |||| |||||| || Sbjct 734877 GAATCTTCGCCTTCA-CGTTGTCGATCGTGTCCGAAGATTCGACCTCCAACGTGATCGTC 734935 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| ||||| || || || || ||||| Sbjct 734936 TTGCCCGTGAGCGTCTTCACGAATATCTGCAT 734967 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | |||||||||||| || | || |||||||||||| || ||||| || Sbjct 734969 CCTCCGCGCAGACGCAACACCAGGTGAAGCGTGGACTCCTTTTGGATGTTATAGTCCGAA 735028 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 || || || | || ||||||||||| |||||||| ||||| ||||| || |||| Sbjct 735029 AGGGTACGTCCATCTTCGAGCTGCTTCCCGGCGAAAATCAAACGCTGTTGATCGG 735083 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||||| || || || |||| |||||||||||||| ||||| Sbjct 735568 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGACCGTCCTCGAGCTGCTTGCCCGCGAA 735627 Query 46462 TATCAAGCGCTGCTGGTC 46479 |||||||||||||| || Sbjct 735628 GATCAAGCGCTGCTGATC 735645 >seq35 Length=1232546 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || || | ||| |||||| ||||| ||||||||| || ||||| |||| || Sbjct 1141416 CACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTC 1141357 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 |||||||||||| ||||| |||| ||||||||| |||| Sbjct 1141356 GAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGATCGG 1141319 >seq13 Length=1377620 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| ||||| ||||||||| || || || |||| || Sbjct 90782 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTACGGCCGTCCTC 90841 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 ||||||||||||||||| |||| |||||||||||||| Sbjct 90842 AAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCGG 90879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237424963760