Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq73 203 4e-47 seq58 104 3e-17 seq56 93.3 5e-14 >seq73 Length=2658327 Score = 203 bits (224), Expect = 4e-47 Identities = 258/355 (73%), Gaps = 0/355 (0%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || ||||| || ||||| || |||||||| Sbjct 1175785 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGCCTTGACCTCGAAGATACCC 1175844 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | | ||| ||||| || || || ||||| || || || ||||| ||| Sbjct 1175845 TCCTCGATGGTCAGGAGCGACACATCGAAGGTTCCTCCACCGAGATCGAAGATGAGCACG 1175904 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || | | ||||| || |||||||| || || || || || || || || Sbjct 1175905 TTGCGCTCACCCTGGACCTTCTTGTCAAGACCGTAGGCAATGGCGGCGGCGGTGGGCTCG 1175964 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| |||||||| || || ||||||| || || || || ||| Sbjct 1175965 TTGATGATACGGAGGACGTTGAGGCCAGCGATGGTGCCCGCATCCTTGGTGGCCTGCCGT 1176024 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 ||||| ||||| |||||||| || || || ||||| ||| ||||| | |||||| Sbjct 1176025 TGCGAGTCGTTGAAGTAGGCGGGTACGGTGACGACGGCGCTGGTGACGGTGCCACCGAGG 1176084 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 || || || |||| || ||||| ||| | || ||||| || || |||||||||| Sbjct 1176085 TAGGACTCGGCGACCTCCTTCATCTTGATGAGGACCATGGAGGAGATCTCTTCAG 1176139 Score = 125 bits (138), Expect = 9e-24 Identities = 262/385 (68%), Gaps = 4/385 (1%) Strand=Plus/Minus Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| |||||||| || || | || | |||||| |||||||| | | |||| Sbjct 2300174 GTGCGCTTAGCGCGCTCGCAGGCACTGCGGAGACGACGGAGGGCACGAGCATCGTCGGAG 2300115 Query 7400 ATATCTTTCTTATGTTTACGTTTA-AACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATC 7458 || || | || | | | | ||||| | |||||| |||||| | || Sbjct 2300114 ATGTCGTGGCCG-GTCTTCTTCTGGAACTCCTTCTTGAAGTGCTCAAGGAGGTTGTTGTC 2300056 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 ||| || ||||||||||| || || || || || || || ||||| | |||| ||| || Sbjct 2300055 GAAGTCCTCACCACCCAAATGGGTGTCACCAGCAGTAGCCTTGACAGCGAAGACACCACC 2299996 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 ||||| | | || ||||| || || || ||||| || || || ||||| ||||| Sbjct 2299995 AGTGATGTTGAGGAGAGAGACATCGAAGGTTCCGCCACCAAGATCGAAGATGAGGACGTT 2299936 Query 7579 CGTATCGTCGTCTTTGTTCTTA-TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 | | || | | ||| || ||||||||||| || || || || || || || || | Sbjct 2299935 CTTCTCCTGG-CTTGATTGGCGGTCGAGACCGTAGGCAATGGCAGCAGCGGTGGGCTCGT 2299877 Query 7638 TAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTT 7697 | || ||||| || | || ||||| || | | ||||| || ||||| | |||| Sbjct 2299876 TGATGATACGGAGGACCTCGAGACCAGCGATGGCACCAGCATCCTTGGTCGCAAGACGTT 2299817 Query 7698 GCGAATCGTTAAAGTAGGCCGGGAC 7722 |||| ||||| |||||||||||||| Sbjct 2299816 GCGAGTCGTTGAAGTAGGCCGGGAC 2299792 >seq58 Length=595509 Score = 104 bits (114), Expect = 3e-17 Identities = 235/353 (67%), Gaps = 3/353 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | || || || || ||||| || ||| || || | || Sbjct 378085 TCAAAGTCCTCACCACCAAGATGGGTGTCACCAGCGGTAGCCAGGACCTCGAACACGCCG 378026 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | || ||||| || ||||||||||| || || | | | | Sbjct 378025 TCGTCGATGGAGAGGAGGGAGACATCGAAGGTACCACCACCGAGATCGTAGACAATGATC 377966 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | || ||| | | ||||| || |||||||| ||||| || || || || || || Sbjct 377965 TGCGACTCGCCACC---CTTCTTGTCAAGACCGTAGGCGATGGCAGCGGCGGTGGGCTCG 377909 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || | || ||||| || || |||| || || || || || || Sbjct 377908 TTGATGATACGGAGCACCTGGAGACCAGCGATGGTACCCGCGTCCTTGGTGGCCTGACGC 377849 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||| |||||||| ||||| || || || |||| |||||| ||| || Sbjct 377848 TGAGCGTCGTTGAAGTAGGCGGGGACAGTGACAACAGCGTGCGTGACGGGGCGACCAAGG 377789 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || | || ||| | || ||||| ||| ||| ||||| | |||||||| || Sbjct 377788 TAGGCCTCAGCGGTCTCCTTCATCTTGCCAAGGACCATGGCGGAAATCTCCTC 377736 >seq56 Length=641713 Score = 93.3 bits (102), Expect = 5e-14 Identities = 191/282 (68%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| ||||||||||||||||| || || || ||| | || || || |||| ||| Sbjct 560016 ATCGAAGTCTTCACCACCCAAGTGCGTGTCACCATTGGTAGACTTCACCTCGAAGACACC 560075 Query 7516 -TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574 | || || | | | | || | ||| || |||||||| |||| ||| | | | Sbjct 560076 CTTCTGCA-TCTCCAGAATGGAGATATCGAAGGTACCACCGCCCAAGTCGTAGACCGCGA 560134 Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 | || | |||| | || | |||||||| || | || || || || || | Sbjct 560135 TGACCGAGTTGTCGGCACGGT------CAAGACCGTAAGCAAGGGCGGCTGCGGTGGGCT 560188 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || || | |||||| || || || |||| || | ||||| ||||||||||| | Sbjct 560189 CGTTGATGACACGAAGGACGTCGAGACCCGCAACGGTGCCGGCATCCTTCGTCGCTTGCC 560248 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 |||| | ||||| ||||| || ||||| || |||||||||| Sbjct 560249 GTTGTGCGTCGTTGAAGTATGCGGGGACAGTAACGACCGCGT 560290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131704395920