Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq62 111 1e-19 seq2 105 4e-18 >seq62 Length=3011317 Score = 111 bits (122), Expect = 1e-19 Identities = 143/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| |||||||| | | | || |||| ||||| || || ||||| || Sbjct 735341 TCCTTCTGAATGTTGTAGTCCGACAAGGTGCGACCATCCTCCAGTTGCTTACCGGCGAAG 735400 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| |||| | ||||||||||| ||||||| ||||| Sbjct 735401 ATAAGACGTTGCTGGTCAGGCGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTGAC---- 735456 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | | ||||| | ||| | ||| || |||| ||| || || || ||||| | ||||| Sbjct 735457 GTTGTCGATGGTATCCGACGACTCGACCTCGAGGGTGATAGTCTTGCCCGTCAACGTCTT 735516 Query 34967 CACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 735517 GACGAAGATCTGCAT 735531 >seq2 Length=1429897 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| ||||| | || | || || ||||| || || || || Sbjct 256687 TCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAG 256628 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||| ||||||| Sbjct 256627 ATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTG 256568 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| || |||| ||| || || || || || |||||||| ||| Sbjct 256567 TCAATGGTATCCGAGGACTCGACCTCGAGGGTGATCGTCTTGCCAGTCAGAGTCTTGACA 256508 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 256507 AAGATCTGCAT 256497 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || || | || |||| ||||| || || || ||||| Sbjct 256968 TCCTTCTGAATGTTGTAGTCGGACAGCGTGCGGCCATCCTCCAGTTGCTTACCCGCAAAG 256909 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || |||||||| | || | |||||||| || |||||| ||||| Sbjct 256908 ATCAACCGCTGCTGGTCCGGGGGAATACCCTCCTTATCCTGAATCTTTGCCTTGAC---- 256853 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | | ||||| | ||| | ||| || |||| || || || || || || |||||||| Sbjct 256852 GTTGTCGATGGTGTCCGAAGACTCCACCTCGAGAGTGATCGTCTTGCCGGTCAGAGTCTT 256793 Query 34967 CACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 256792 GACAAAGATCTGCAT 256778 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||| |||||||| ||||| || | || |||| || ||||| || || Sbjct 257254 GTGCTCTCCTTCTGGATGTTATAATCCGAGAGCGTGCGGCCATCCTCGAGCTGCTTGCCC 257195 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 || || || || || ||||| || | || | ||||||||||| |||||| || Sbjct 257194 GCGAAGATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTC 257135 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 ||| | |||| ||| | ||| || || | || || || || |||||||| ||| Sbjct 257134 ACGTTATCGATCGTGTCAGACGACTCGACCTCCAGCGTGATAGTCTTCCCCGTGAGGGTC 257075 Query 34965 TTCACAAAGATCTGCAT 34981 || || || |||||||| Sbjct 257074 TTGACGAAAATCTGCAT 257058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633054006864