Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq62 100 2e-16 seq2 91.5 1e-13 >seq62 Length=3011317 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| |||||||||||||| || || |||||||| || || | || |||| |||| ||| Sbjct 734764 ATGAAGCGTGCTCTCTTTCTGGATGTTGTAATCCGAGAGCGTGCGCCCGTCCTCCAGCTG 734823 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || || || || || |||||||| || | |||| |||||||| || |||||| Sbjct 734824 CTTGCCCGCGAAGATGAGGCGCTGTTGGTCTGGCGGAATACCCTCCTTATCCTGAATCTT 734883 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || || | | | || || | || ||||||| ||| ||||| || ||||| Sbjct 734884 CGCCTTCACGTTGTCGATCGTGTCCGAAGATTCGACCTCCAACGTGATCGTCTTGCCCGT 734943 Query 48743 CAAAGTTTTTACAAAAATCTGCATC 48767 | || || || || ||||||||| Sbjct 734944 GAGCGTCTTCACGAATATCTGCATC 734968 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || ||||| ||| || ||||| ||||| || || | | ||| | || |||| ||| Sbjct 735329 TGAAGCGTTGACTCCTTCTGAATGTTGTAGTCCGACAAGGTGCGACCATCCTCCAGTTGC 735388 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 |||||||| || || || || || || || | |||| |||||||||||| |||||| Sbjct 735389 TTACCGGCGAAGATAAGACGTTGCTGGTCAGGCGGAATGCCCTCCTTGTCTTGAATCTTC 735448 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | | || |||| ||| ||||| | || || || || |||||| Sbjct 735449 GCCTTGACGTTGTCGATGGTATCCGACGACTCGACCTCGAGGGTGATAGTCTTGCCCGTC 735508 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 || || || || || |||||||| Sbjct 735509 AACGTCTTGACGAAGATCTGCAT 735531 >seq2 Length=1429897 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || |||||||| || || || || ||||| || || | || | || || | |||| Sbjct 257260 TGGAGGGTGCTCTCCTTCTGGATGTTATAATCCGAGAGCGTGCGGCCATCCTCGAGCTGC 257201 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || || || || || ||||| ||||||| ||| | ||||||||||| ||||| Sbjct 257200 TTGCCCGCGAAGATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGGATCTTC 257141 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | | | || |||| ||| ||||||| ||| || || || ||||| Sbjct 257140 GCCTTCACGTTATCGATCGTGTCAGACGACTCGACCTCCAGCGTGATAGTCTTCCCCGTG 257081 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || ||||||||||| Sbjct 257080 AGGGTCTTGACGAAAATCTGCAT 257058 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| ||||| || || ||| | ||| |||| || | |||||| || || || Sbjct 256688 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAA 256629 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| || || | || | |||||||||||| ||||| ||| || Sbjct 256628 GATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTT 256569 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | ||| ||||| | || ||||| || || |||| ||| || || Sbjct 256568 GTCAATGGTATCCGAGGACTCGACCTCGAGGGTGATCGTCTTGCCAGTCAGAGTCTTGAC 256509 Query 48755 AAAAATCTGCAT 48766 ||| |||||||| Sbjct 256508 AAAGATCTGCAT 256497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936959310574