Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq62 111 1e-19 seq2 100 3e-16 >seq62 Length=3011317 Score = 111 bits (122), Expect = 1e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 24807 GAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAA 24866 |||| |||||||||||||| |||||||| || |||||||| ||||| || ||| | | Sbjct 735092 GAATCCCTCCCGATCAACAGCGTTTGATTTTCGCCGGGAAGCAGCTCGAAGATGGACGTA 735033 Query 24867 ACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCG 24926 | | || || |||||||| |||||||| || || || ||| |||||||||| |||||| Sbjct 735032 CCCTTTCGGACTATAACATCCAAAAGGAGTCCACGCTTCACCTGGTGTTGCGTCTGCGCG 734973 Query 24927 GAGG 24930 |||| Sbjct 734972 GAGG 734969 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || || || ||||| || ||||| || || | | Sbjct 735531 ATGCAGATCTTCGTCAAGACGTTGACGGGCAAGACTATCACCCTCGAGGTCGAGTCGTCG 735472 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| |||||||| || || || || || || || Sbjct 735471 GATACCATCGACAACGTCAAGGCGAAGATTCAAGACAAGGAGGGCATTCCGCCTGACCAG 735412 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||| ||||| || || ||||||||| | | | |||| || || ||| Sbjct 735411 CAACGTCTTATCTTCGCCGGTAAGCAACTGGAGGATGGTCGCACCTTGTCGGACTACAAC 735352 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| || || || ||| Sbjct 735351 ATTCAGAAGGAGTCAACGCTTCAC 735328 >seq2 Length=1429897 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || ||||| || || | | Sbjct 256778 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACTCTCGAGGTGGAGTCTTCG 256837 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||| || || || || || || || || || || Sbjct 256838 GACACCATCGACAACGTCAAGGCAAAGATTCAGGATAAGGAGGGTATTCCCCCGGACCAG 256897 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||| || || || ||||||||| | | |||| || || ||| Sbjct 256898 CAGCGGTTGATCTTTGCGGGTAAGCAACTGGAGGATGGCCGCACGCTGTCCGACTACAAC 256957 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 ||||| ||||| ||||| || || Sbjct 256958 ATTCAGAAGGAGTCGACCCTTCA 256980 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || ||||| ||||| || || || | | Sbjct 257058 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACTATCACGCTGGAGGTCGAGTCGTCT 257117 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || ||||| Sbjct 257118 GACACGATCGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCCCCGGATCAG 257177 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || ||||| |||||| | | | || ||||||||| Sbjct 257178 CAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGATTATAAC 257237 Query 24884 ATTCAAAAGGA 24894 || || ||||| Sbjct 257238 ATCCAGAAGGA 257248 Score = 82.4 bits (90), Expect = 7e-11 Identities = 145/210 (69%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || ||||| || || || | Sbjct 256497 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 256556 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||| ||||| || || || || || || || Sbjct 256557 GATACCATTGACAACGTCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 256616 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || || || ||||| ||||| | | | || || || ||| Sbjct 256617 CAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACTCTTTCCGACTACAAC 256676 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTGGT 24912 ||||| ||||| || || || || |||||| Sbjct 256677 ATTCAGAAGGAGTCAACCCTCCACCTTGGT 256706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896823926640