Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2 125 2e-23 seq62 122 3e-22 seq58 104 7e-17 >seq2 Length=1429897 Score = 125 bits (138), Expect = 2e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || ||||| || || || ||| || || || |||||||| || Sbjct 257285 ACCACCACGCAGGCGGAGGACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTATAATCCGA 257226 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || || || ||||| ||||| |||||||| || || Sbjct 257225 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGATCCGGGGG 257166 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || ||||| || || || || || ||||| |||| ||||| | || || Sbjct 257165 GATACCCTCCTTGTCCTGGATCTTCGCCTTCACGTTATCGATCGTGTCAGACGACTCGAC 257106 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || | ||||| || || || || || || |||||||||||| Sbjct 257105 CTCCAGCGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATT 257057 Score = 123 bits (136), Expect = 8e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 140532 AGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGT 140591 |||||||| || ||||| || ||||| || || || || | || || ||||| || ||| Sbjct 256983 AGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTGCGGCCATCCTCCAGT 256924 Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || || |||||||| | || ||||| || || ||||| || || ||||||||||| Sbjct 256923 TGCTTACCCGCAAAGATCAACCGCTGCTGGTCCGGGGGAATACCCTCCTTATCCTGAATC 256864 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || || || || || || || | || || | || || || || || | ||||| ||| Sbjct 256863 TTTGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGAGTGATCGTCTTGCCG 256804 Query 140712 GTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || ||||| |||||||| Sbjct 256803 GTCAGAGTCTTGACAAAGATCTGCAT 256778 >seq62 Length=3011317 Score = 122 bits (134), Expect = 3e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140532 AGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGT 140591 || ||||| || ||||| || ||||| || || || || || || || ||||| || ||| Sbjct 735326 AGGTGAAGCGTTGACTCCTTCTGAATGTTGTAGTCCGACAAGGTGCGACCATCCTCCAGT 735385 Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || || || ||||| ||||||||||| ||||| ||||| || || || || ||||| Sbjct 735386 TGCTTACCGGCGAAGATAAGACGTTGCTGGTCAGGCGGAATGCCCTCCTTGTCTTGAATC 735445 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || || || || || || || | ||| || | || || || || || | ||||| || Sbjct 735446 TTCGCCTTGACGTTGTCGATGGTATCCGACGACTCGACCTCGAGGGTGATAGTCTTGCCC 735505 Query 140712 GTTAGTGTTTTTACAAAAATCTGCATT 140738 || | || || || || ||||||||| Sbjct 735506 GTCAACGTCTTGACGAAGATCTGCATT 735532 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 140532 AGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGT 140591 |||||||| || |||||| || || || ||||| || | || ||||| || || || Sbjct 734762 AGATGAAGCGTGCTCTCTTTCTGGATGTTGTAATCCGAGAGCGTGCGCCCGTCCTCCAGC 734821 Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || || || ||||| || || || || || || ||||| || || ||||||||||| Sbjct 734822 TGCTTGCCCGCGAAGATGAGGCGCTGTTGGTCTGGCGGAATACCCTCCTTATCCTGAATC 734881 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || || || || || || |||| || || | ||| || || | || | ||||| || Sbjct 734882 TTCGCCTTCACGTTGTCGATCGTGTCCGAAGATTCGACCTCCAACGTGATCGTCTTGCCC 734941 Query 140712 GTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || |||||||| Sbjct 734942 GTGAGCGTCTTCACGAATATCTGCAT 734967 >seq58 Length=595509 Score = 104 bits (114), Expect = 7e-17 Identities = 243/366 (66%), Gaps = 3/366 (1%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| || ||||| | ||||| | | || |||||||| | ||||| || || | Sbjct 377733 CCCGAGGAGATTTCCGCCATGGTCCTTGGCAAGATGAAGGAGACCGCTGAGGCCTACCTT 377792 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 ||| | || || | |||||| | ||||| || ||||| || || || || |||||| Sbjct 377793 GGTCGCCCCGTCACGCACGCTGTTGTCACTGTCCCCGCCTACTTCAACGACGCTCAGCGT 377852 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || || || || | ||| || || | | || || | || || || || Sbjct 377853 CAGGCCACCAAGGACGCGGGTACCATCGCTGGTCTCCAGGTGCTCCGTATCATCAACGAG 377912 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||| || || || || || || || ||||| || | | ||| | || | || Sbjct 377913 CCCACCGCCGCTGCCATCGCCTACGGTCTTGACAAGAAGGGTGGC---GAGTCGCAGATC 377969 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || | | ||| | ||||||||||| || ||||| || || || | | || || || Sbjct 377970 ATTGTCTACGATCTCGGTGGTGGTACCTTCGATGTCTCCCTCCTCTCCATCGACGACGGC 378029 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 | || || || || || |||||||| || ||||||||||| || || ||||| || Sbjct 378030 GTGTTCGAGGTCCTGGCTACCGCTGGTGACACCCATCTTGGTGGTGAGGACTTTGACAAC 378089 Query 349892 CGTCTC 349897 ||| || Sbjct 378090 CGTGTC 378095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515251720840814