Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polyporus_20brumalis_20[genbank_20GCA_5F001792895.1_202016-10-20] 138 sequences; 53,434,618 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq51 132 5e-26 seq1 114 1e-20 seq54 96.9 4e-15 >seq51 Length=3165537 Score = 132 bits (146), Expect = 5e-26 Identities = 323/486 (66%), Gaps = 10/486 (2%) Strand=Plus/Plus Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| || ||||||||||||| ||| ||||||| ||| || || ||||||||| Sbjct 1579595 GGCATGAGGCCACGCTTCTTCAGCCAGAAGATGGAGGCGAACGAGCCCGAGAAGAAGATA 1579654 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATC---GGAAGTCATC 74927 || ||||| ||||||||||| || || | ||| || | | || | | ||| Sbjct 1579655 CCCTCGACGGCGGCAAAGGCGACGAGACGCTCCGCAAAGGCAACCTCCTTGTCGCTGATC 1579714 Query 74928 CAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAG 74987 ||| ||||||| || || || |||| ||||| || || || || | |||| Sbjct 1579715 CAACGAAGAGCCCAGTCGGCCTTCTTCTTGATGCAAGGGATCGTGTCAATGGCATCGAAG 1579774 Query 74988 AGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCC 75047 ||| | | || | || ||||||| | |||| || | || ||||| ||||| Sbjct 1579775 AGGTATTCGCGCTGCTGAGGGTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCG 1579834 Query 75048 GAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGT 75107 || ||||| ||| | | ||| | ||||||| | || ||||| || ||| Sbjct 1579835 GAGTGAATGTTCTCCATCATGATTTGGAAACCGTAGAAGCAGCGTGCCTCCGCGGCCTGG 1579894 Query 75108 ACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAA 75167 || || || || ||| | | ||| ||||| ||||||| || || || || ||||| Sbjct 1579895 ACCTCGTTGGAGAAACGCTCGACGAGGTTCTCGTTGACGATACCATCGGACGCAGCGAAG 1579954 Query 75168 AAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGA---GTTTGTCCCAATCC 75224 || || || || ||| ||||| ||||||||||| ||| | |||| ||| || Sbjct 1579955 AAGGCGAGGACGTGGGAGATGAAGTGACGCTCATCGTCGTTGAGGCGGTTGTTCCAGTCG 1580014 Query 75225 TTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA--ACTCCCAATCGCCTTTT 75282 | |||||| | || ||| |||||||| |||||||||| | || | ||||||| Sbjct 1580015 TGGAGGTCCTTGGACAGATCCATCTCCTCCGCCGTCCAGAAGGAGGCCTCA--GCCTTTT 1580072 Query 75283 TGTACA 75288 |||||| Sbjct 1580073 TGTACA 1580078 Score = 104 bits (114), Expect = 3e-17 Identities = 330/506 (65%), Gaps = 12/506 (2%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || || || | ||| || | || |||||||| | ||||| ||||| || || |||||| Sbjct 1581900 CCCTCGTCGCGGCTGATGAGCTCGTTCGAAAATGTGAGGCCGGGCATTAGCCCGCGCTTC 1581841 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| ||||||| ||| |||||| ||||||||| || ||||| || ||| Sbjct 1581840 TTGATCCAGAAGATGGAGGCGAATGAACCAGAGAAGAAGATACCCTCGACGGCGGCGAAG 1581781 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCA---TCGGAAGTCATCCAAGTCTGAGCCCATTCA 74945 || || || || | |||||| || ||| || ||||| | ||||| || Sbjct 1581780 GCAACGAGCCGCTCAGCGAACACTGAGCGCTCGTCAGATATCCAGCGGAGTGCCCAGTCT 1581721 Query 74946 GCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTC 75004 || || |||| ||| |||| || ||||| || | ||||||| | ||| | Sbjct 1581720 GCCTTCTTCTTGAT-GCATGGGATGGTCTCGATGGCGTCGAAGAGGAAGGTACGCTCGGC 1581662 Query 75005 GGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTT 75064 ||||||||||| | ||||||| | || || || ||||| || || | ||| | Sbjct 1581661 GGGATCCTTGATGTAGGTGTCAATGAGGAGGGAATAGGTCTCAGAGTGCACGTTTTCGAT 1581602 Query 75065 GAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATT 75124 | ||| | ||||||| | || ||||| || ||| || || || || || Sbjct 1581601 CATTATCTGAAAGCCGTAGAAGCAGCGGGCCTCCGCGGCCTGGACTTCATTCGAGAACCG 1581542 Query 75125 CATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTT 75184 | | | | ||||| | ||||| ||||| ||||||||||| || || || || | Sbjct 1581541 CTCGACAAGGTTCTCGTTCACGATACCGTCTGAGGCGGCGAAGAAGGCGAGGAC--ATAG 1581484 Query 75185 GATA--AAGTGGCGCTCATCGTCAGTGAGTTT---GTCCCAATCCTTCAGGTCCCCCGCC 75239 || | || || ||||| | |||||| | || ||| ||| ||||| || Sbjct 1581483 GACAGGAAATGCCGCTCGTTTGGGGTGAGTCTCCCGTTCCAGTCCCAGAGGTCGTGCGAG 1581424 Query 75240 AAATCAATCTCCTCGACCGTCCAGAA 75265 | ||||||||||| || ||||| || Sbjct 1581423 AGGTCAATCTCCTCCACTGTCCAAAA 1581398 >seq1 Length=3841264 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 || ||||| || ||||||||||||||| || || ||||| |||||| |||| ||||| Sbjct 3254381 GGTATCGTCCCCATGCTCCGCGTCTTCGACTCTACCGCCCGCTACGTCGACCAAGGTGGC 3254322 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 |||||| || | |||||||||||| | ||||||||||| | ||| | | ||| Sbjct 3254321 AACAAGCGCCCTGGTGCATTCGCCATCTACTTGGAGCCGTGGCATCCGGACGTCTTCGAG 3254262 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACA 53671 || | || ||||| ||| || || | || ||| | ||| |||||| |||| Sbjct 3254261 TTCTTGGACCTGCGCAAGAACCATGGCAAGGAGGAGGTTCGCGCTCGTGACTTGTTCTAT 3254202 Query 53672 GCTCTGTGGATTCCGGACCTCTT 53694 || || |||||||| |||||||| Sbjct 3254201 GCCCTTTGGATTCCCGACCTCTT 3254179 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||||| | ||||| || || || ||| | ||| || | |||||| ||| Sbjct 3254732 TCATGCGTGTCGCAGTCGGTATACATGGCGATGACATCGAGCGGGTGCTTGAGACCTACC 3254673 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | ||||| || ||||| | || ||||| |||||||| ||||| Sbjct 3254672 ACCTCATGTCAGAGCGTTACTTCACACACGCTTCACCTACCCTCTTCAACGCCGGTACTC 3254613 Query 53313 ATCACCCTCAGATGTCGAGC---TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 |||||||||||| |||| |||||| | || |||||||| ||||| ||||| | Sbjct 3254612 CTCACCCTCAGAT---GAGCTCATGCTTCTTAGTTTGCATGAAGGACGACTCCATCGAGG 3254556 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCC 53398 | || ||| || |||||||| || ||| Sbjct 3254555 GGATTTACTCCACCCTCAAGGACTGCGCC 3254527 >seq54 Length=666141 Score = 96.9 bits (106), Expect = 4e-15 Identities = 172/248 (69%), Gaps = 11/248 (4%) Strand=Plus/Minus Query 124591 CGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAGCTCGA------TTGGCTTGGCCG 124644 |||| |||||||| |||||||| || ||||| || || | | | ||||| || Sbjct 258323 CGTGTCCCCAGTCACGCTTGGCGTCGAGGTTGCCCAGGTACAGGCACTTCTGCTTGCCCA 258264 Query 124645 TCTTGTTCCACTCCGCCAAACCCAGTGTAATCTTGCGCGTCACAAAC-TCGGAACCGCGT 124703 | | | | ||||| || | | ||||| |||||||| ||| || | ||||| Sbjct 258263 GGTGGATGTCCGCCGCCGCAC---GGGAGATCTTCCGCGTCACGAACGTCCGG-CCGCGG 258208 Query 124704 CGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGG 124763 ||| |||||||||||||| ||||| | |||||| |||| ||||||| ||||||| Sbjct 258207 CGCGGGCTCTCGTGGTTGAACAAGATGCCGTTGCACGCATACATGCCGTACGCCTCGCGG 258148 Query 124764 TAGTTTTTCGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAG 124823 ||||| ||| ||||| || || | | ||| | |||||| || || || |||||| Sbjct 258147 TAGTTGACCGTGATCCAGTAGCCGTACATCTTCGCCACGCCGTACGGCGAGCGCGGGTAG 258088 Query 124824 AATGGGGT 124831 || || || Sbjct 258087 AACGGCGT 258080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215056052400